Evidence map›Paper›PMID 36253962›Full record

ArticleJournal of clinical laboratory analysis2022

Laboratory and clinical evaluation of a microarray for the detection of ATP7B mutations in Wilson disease in China.

Siyu Jia, Xiaojin Li, Wei Zhang, Bei Zhang, Zhen Wu, Weijia Duan, Xiaojuan Ou, Donghu Zhou, Jian Huang

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Siyu JiaExperimental Center, Beijing Friendship Hospital, Capital Medical University, Beijing, China.ORCID https://orcid.org/0000-0002-9735-0087
Xiaojin LiExperimental Center, Beijing Friendship Hospital, Capital Medical University, Beijing, China.
Wei ZhangClinical Research Center for Rare Liver Diseases, Capital Medical University, Beijing, China.
Bei ZhangExperimental Center, Beijing Friendship Hospital, Capital Medical University, Beijing, China.
Zhen WuClinical Research Center for Rare Liver Diseases, Capital Medical University, Beijing, China.
Weijia DuanClinical Research Center for Rare Liver Diseases, Capital Medical University, Beijing, China.
Xiaojuan OuClinical Research Center for Rare Liver Diseases, Capital Medical University, Beijing, China.
Donghu ZhouExperimental Center, Beijing Friendship Hospital, Capital Medical University, Beijing, China.
Jian HuangExperimental Center, Beijing Friendship Hospital, Capital Medical University, Beijing, China.
Capital Medical University · CN

Funding

Beijing Natural Science Foundation 7222036Digestive Medical Coordinated Development Center of Beijing Municipal Administration of Hospitals XXT03Digestive Medical Coordinated Development Center of Beijing Municipal Administration of Hospitals XXX0101Digestive Medical Coordinated Development Center of Beijing Municipal Administration of Hospitals XXZ0501
6 · The paper itself

Abstract

BACKGROUND AND

objectiveWilson disease (WD) is an autosomal recessive copper metabolic disorder caused by mutations in ATP7B. Sanger sequencing is currently used for ATP7B variant identification. However, the ATP7B gene contains 21 exons, which makes sequencing of the entire gene both complex and time-consuming. Therefore, a simpler assay is urgently needed.

methodsWe performed a laboratory and clinical evaluation of an oligonucleotide microarray for the detection of 24 ATP7B recurrent mutations (except p.P992L) in Chinese patients with WD.

resultsThe accuracy of the microarray was evaluated by screening for ATP7B mutations in 126 patients including 106 suspected WD samples and 20 patients with other liver diseases as negative control. Results were confirmed by Sanger sequencing. We established a reliable microarray system for the rapid detection of the 24 ATP7B mutations, with a sensitivity of 30 ng/test genomic DNA and specificity of 100% for all loci; the coefficient of variation in repeatability tests was <10%. Clinical evaluation showed an overall concordance between the microarray detection and sequencing of 100%, and 81.13% (86/106) of suspected WD cases showed ATP7B mutations by microarray detection. Microarray and Sanger sequencing identified p.R778L (50.94%), p.A874V (17.92%), p.P992L (11.32%), p.V1106I (11.32%), and p.I1148T (6.60%) as the most common mutations in WD patients.

conclusionsOur microarray system is customizable and easily used for high-throughput detection of certain recurrent ATP7B mutations, providing a simpler method suitable for WD genetic diagnosis in China.

Indexed as

Copper-Transporting ATPasesHepatolenticular DegenerationDNA Mutational AnalysisExonsHumansMutationOligonucleotide Array Sequence AnalysisATP7B protein, humanCopper-Transporting ATPasesATP7BDNA microarraymutation detectionWilson disease

Identifiers

PMID36253962
PMCPMC9701891
OpenAlexW4306674004

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.