Evidence map›Paper›PMID 36253612›Full record

ReviewNature protocols2023

Direct delivery and fast-treated Agrobacterium co-culture (Fast-TrACC) plant transformation methods for Nicotiana benthamiana.

Jon P Cody, Michael F Maher, Ryan A Nasti, Colby G Starker, James C Chamness, Daniel F Voytas

Open access · greenAbstract readReview
In one paragraph

Review in Nature protocols, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  9. Article
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  11. Article
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  13. Article
  14. Improved Protocol for EfficientPlants (Basel, Switzerland) · 2024
    Article
  15. Review
  16. Review
  17. Review
  18. Robust soybean leaf agroinfiltration.Plant cell reports · 2024
    Article
  19. Biotechnology reports (Amsterdam, Netherlands) · 2024
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jon P CodyCenter for Precision Plant Genomics, University of Minnesota, St. Paul, MN, USA.
Michael F MaherCenter for Precision Plant Genomics, University of Minnesota, St. Paul, MN, USA.ORCID 0000-0003-4134-649X
Ryan A NastiCenter for Precision Plant Genomics, University of Minnesota, St. Paul, MN, USA.
Colby G StarkerCenter for Precision Plant Genomics, University of Minnesota, St. Paul, MN, USA.ORCID 0000-0002-6774-7227
James C ChamnessCenter for Precision Plant Genomics, University of Minnesota, St. Paul, MN, USA.
Daniel F VoytasCenter for Precision Plant Genomics, University of Minnesota, St. Paul, MN, USA. Voytas@umn.edu.ORCID 0000-0002-4944-1224
University of Minnesota · US

Funding

TRAINING FOR FUTURE BIOTECHNOLOGY DEVELOPMENTT32GM008347 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI SCHMIDT-DANNERT, CLAUDIA · 1990 to 2021
$11.0M
NIGMS NIH HHS T32 GM008347
6 · The paper itself

Abstract

There is an expanding need to modify plant genomes to create new plant germplasm that advances both basic and applied plant research. Most current methods for plant genome modification involve regenerating plants from genetically modified cells in tissue culture, which is technically challenging, expensive and time consuming, and works with limited plant species or genotypes. Herein, we describe two Agrobacterium-based methods for creating genetic modifications on either sterilely grown or soil-grown Nicotiana benthamiana plants. These methods use developmental regulators (DRs), gene products that influence cell division and differentiation, to induce de novo meristems. Genome editing reagents, such as the RNA-guided endonuclease Cas9, may be co-delivered with the DRs to create shoots that transmit edits to the next generation. One method, called fast-treated Agrobacterium co-culture (Fast-TrACC), delivers DRs to seedlings grown aseptically; meristems that produce shoots and ultimately whole plants are induced. The other approach, called direct delivery (DD), involves delivering DRs to soil-grown plants from which existing meristems have been removed; the DRs promote the formation of new shoots at the wound site. With either approach, if transgene cassettes and/or gene editing reagents are provided, these induced, de novo meristems may be transgenic, edited or both. These two methods offer alternative approaches for generating novel plant germplasm that are cheaper and less technically challenging and take less time than standard approaches. The whole procedure from transfer DNA (T-DNA) assembly to recovery of edited plants can be completed in ~70 d for both DD and Fast-TrACC.

Indexed as

AgrobacteriumNicotianaCoculture TechniquesCRISPR-Cas SystemsGene EditingGenome, PlantPlants, Genetically ModifiedSoilTransformation, GeneticSoil

Identifiers

PMID36253612
PMCPMC9839554
OpenAlexW4306411871

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.