Evidence map›Paper›PMID 36253464›Full record

ArticleCommunications biology2022

Host adaptive mutations in the 2009 H1N1 pandemic influenza A virus PA gene regulate translation efficiency of viral mRNAs via GRSF1.

Michael Lutz, Jordana Schmierer, Toru Takimoto

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

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  11. Zoonosis and zooanthroponosis of emerging respiratory viruses.Frontiers in cellular and infection microbiology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Michael LutzDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, 14642, USA.ORCID 0000-0002-3318-0808
Jordana SchmiererDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Toru TakimotoDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, 14642, USA. toru_takimoto@urmc.rochester.edu.ORCID 0000-0001-6612-694X
University of Rochester Medical Center · US

Funding

Training in Wellness and Resiliency at the University of Rochester Medical Center and College of Arts, Sciences & EngineeringT32GM135134 · NIGMS · UNIVERSITY OF ROCHESTER · PI Jeffrey J Hayes, Lynne E Maquat · 2020 to 2026
$2.9M
Influenza virus host shutoff mechanismR01AI129988 · NIAID · UNIVERSITY OF ROCHESTER · PI TAKIMOTO, TORU · 2017 to 2021
$1.9M
NIAID NIH HHS R01 AI129988NIGMS NIH HHS T32 GM135134
6 · The paper itself

Abstract

Avian species are the major natural reservoir from which pandemic influenza A viruses can be introduced to humans. Avian influenza A virus genes, including the three viral polymerase genes, PA, PB1 and PB2, require host-adaptive mutations to allow for viral replication and transmission in humans. Previously, PA from the 2009 pH1N1 viral polymerase was found to harbor host-adaptive mutations leading to enhanced viral polymerase activity. By quantifying translation and mRNA transcription, we found that the 2009 pH1N1 PA, and the associated host-adaptive mutations, led to greater translation efficiency. This was due to enhanced cytosolic accumulation of viral mRNA, which was dependent on the host RNA binding protein GRSF1. Mutations to the GRSF1 binding site in viral mRNA, as well as GRSF1 knockdown, reduced cytosolic accumulation and translation efficiency of viral mRNAs. This study identifies a previously unrecognized mechanism by which host-adaptive mutations in PA regulate viral replication and host adaptation. Importantly, these results provide greater insight into the host adaptation process of IAVs and reveal the importance of GRSF1 in the lifecycle of IAV.

Indexed as

Influenza A Virus, H1N1 SubtypeRNA-Binding ProteinsRNA-Dependent RNA PolymeraseViral ProteinsAnimalsHumansMutationRNA, MessengerPA protein, influenza virusesRNA-Binding ProteinsRNA-Dependent RNA PolymeraseRNA, MessengerViral Proteins

Identifiers

PMID36253464
PMCPMC9576711
OpenAlexW4306645227

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.