Evidence map›Paper›PMID 36253381›Full record

ArticleNature communications2022

Mammalian N1-adenosine PARylation is a reversible DNA modification.

Michael U Musheev, Lars Schomacher, Amitava Basu, Dandan Han, Laura Krebs, Carola Scholz, Christof Niehrs

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
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  11. Review
  12. Article
  13. Poly-ADP-ribosylation dynamics, signaling, and analysis.Environmental and molecular mutagenesis · 2024
    Review
  14. Article
  15. Article
  16. Deregulated DNA ADP-ribosylation impairs telomere replication.Nature structural & molecular biology · 2024
    Article
  17. The risky business of ADP-ribosylating telomeric DNA.Nature structural & molecular biology · 2024
    Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Michael U Musheev *Institute of Molecular Biology (IMB), 55128, Mainz, Germany.ORCID 0000-0002-0499-9689
Lars Schomacher *Institute of Molecular Biology (IMB), 55128, Mainz, Germany. l.schomacher@imb-mainz.de.ORCID 0000-0002-3841-5258
Amitava Basu *Institute of Molecular Biology (IMB), 55128, Mainz, Germany.
Dandan HanInstitute of Molecular Biology (IMB), 55128, Mainz, Germany.
Laura KrebsInstitute of Molecular Biology (IMB), 55128, Mainz, Germany.
Carola ScholzInstitute of Molecular Biology (IMB), 55128, Mainz, Germany.
Christof NiehrsInstitute of Molecular Biology (IMB), 55128, Mainz, Germany. c.niehrs@imb-mainz.de.
Institute of Molecular Biology · DEHeidelberg University · DEStemcell Technologies · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Poly-ADP-ribosylation (PARylation) is regarded as a protein-specific modification. However, some PARPs were recently shown to modify DNA termini in vitro. Here, we use ultrasensitive mass spectrometry (LC-MS/MS), anti-PAR antibodies, and anti-PAR reagents to show that mammalian DNA is physiologically PARylated and to different levels in primary tissues. Inhibition of PAR glycohydrolase (PARG) increases DNA PARylation, supporting that the modification is reversible. DNA PARylation requires PARP1 and in vitro PARP1 PARylates single-stranded DNA, while PARG reverts the modification. DNA PARylation occurs at the N1-position of adenosine residues to form N1-Poly(ADP-ribosyl)-deoxyadenosine. Through partial hydrolysis of mammalian gDNA we identify PAR-DNA via the diagnostic deamination product N1-ribosyl-deoxyinosine to occur in vivo. The discovery of N1-adenosine PARylation as a DNA modification establishes the conceptual and methodological framework to elucidate its biological relevance and extends the role of PARP enzymes.

Indexed as

Poly(ADP-ribose) Polymerase InhibitorsPoly ADP RibosylationAdenosineAdenosine DiphosphateAnimalsChromatography, LiquidDeoxyadenosinesDNADNA, Single-StrandedGlycoside HydrolasesMammalsPoly Adenosine Diphosphate RibosePoly (ADP-Ribose) Polymerase-1Tandem Mass SpectrometryAdenosineAdenosine DiphosphateDeoxyadenosinesDNADNA, Single-StrandedGlycoside HydrolasesPoly Adenosine Diphosphate RibosePoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) Polymerase Inhibitors

Identifiers

PMID36253381
PMCPMC9576699
OpenAlexW4306409663

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.