Evidence map›Paper›PMID 36253145›Full record

ArticleACR open rheumatology2022

A Pilot Analysis of Genome-Wide DNA Methylation Patterns in Mouse Cartilage Reveals Overlapping Epigenetic Signatures of Aging and Osteoarthritis.

Vladislav Izda, Christopher M Dunn, Emmaline Prinz, Leoni Schlupp, Emily Nguyen, Cassandra Sturdy, Matlock A Jeffries

Open access · goldAbstract read
In one paragraph

Article in ACR open rheumatology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Vladislav IzdaOklahoma Medical Research Foundation, Arthritis & Clinical Immunology Program, Oklahoma City, and Icahn School of Medicine at Mt. Sinai, New York.ORCID https://orcid.org/0000-0002-7561-2699
Christopher M DunnOklahoma Medical Research Foundation, Arthritis & Clinical Immunology Program and University of Oklahoma Health Sciences Center, Oklahoma City.ORCID https://orcid.org/0000-0002-8611-7271
Emmaline PrinzOklahoma Medical Research Foundation, Arthritis & Clinical Immunology Program, Oklahoma City, Oklahoma.ORCID https://orcid.org/0000-0001-8497-6171
Leoni SchluppOklahoma Medical Research Foundation, Arthritis & Clinical Immunology Program, Oklahoma City, Oklahoma.ORCID https://orcid.org/0000-0002-2837-5942
Emily NguyenOklahoma Medical Research Foundation, Arthritis & Clinical Immunology Program, Oklahoma City, Oklahoma.
Cassandra SturdyOklahoma Medical Research Foundation, Arthritis & Clinical Immunology Program, Oklahoma City, Oklahoma.
Matlock A JeffriesOklahoma Medical Research Foundation, Arthritis & Clinical Immunology Program and University of Oklahoma Health Sciences Center, Oklahoma City.ORCID https://orcid.org/0000-0001-9516-4312
Oklahoma Medical Research Foundation · US

Funding

Visualizing insulin actions on neuronal metabolism and function using fluorescent biosensorsP20GM125528 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI Marisol Castillo-Castrejon · 2019 to 2026
$17.8M
Peripheral blood mononuclear cell epigenetic associations in and biomarkers for knee osteoarthritis development and progression.R01AR076440 · NIAMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI BHUTANI, NIDHI, JEFFRIES, MATLOCK · 2020 to 2025
$3.6M
An integrative study of circulating leukocyte composition, epigenetic patterns, and functional consequences in knee osteoarthritis.K08AR070891 · NIAMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI JEFFRIES, MATLOCK · 2017 to 2021
$862k
Intraarticular microbial DNA as a novel mediator of osteoarthritisR61AR078075 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI JEFFRIES, MATLOCK · 2020 to 2021
$861k
Intraarticular microbial DNA as a novel mediator of osteoarthritisR33AR078075 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI JEFFRIES, MATLOCK · 2022 to 2022
$437k
Congressionally Directed Medical Research Programs PR191652NIAMS NIH HHS K08 AR070891NIAMS NIH HHS K08AR070891NIAMS NIH HHS R01 AR076440NIAMS NIH HHS R01AR076440NIAMS NIH HHS R33 AR078075NIAMS NIH HHS R61 AR078075NIAMS NIH HHS R61AR078075NIGMS NIH HHS P20 GM125528NIGMS NIH HHS P20GM125528
6 · The paper itself

Abstract

objectiveCartilage epigenetic changes are strongly associated with human osteoarthritis (OA). However, the influence of individual environmental OA risk factors on these epigenetic patterns has not been determined; herein we characterize cartilage DNA methylation patterns associated with aging and OA in a mouse model.

methodsMurine knee cartilage DNA was extracted from healthy young (16-week, n = 6), old (82-week, n = 6), and young 4-week post-destabilization of the medial meniscus (DMM) OA (n = 6) C57BL6/J mice. Genome-wide DNA methylation patterns were determined via Illumina BeadChip. Gene set enrichment analysis was performed by Ingenuity Pathway Analysis. The top seven most differentially methylated positions (DMPs) were confirmed by pyrosequencing in an independent animal set. Results were compared to previously published human OA methylation data.

resultsAging was associated with 20,940 DMPs, whereas OA was associated with 761 DMPs. Merging these two conditions revealed 279 shared DMPs. All demonstrated similar directionality and magnitude of change (Δβ 1.0% ± 0.2%, mean methylation change ± SEM). Shared DMPs were enriched in OA-associated pathways, including RhoA signaling (P = 1.57 × 10

conclusionAging and early OA following DMM surgery induce similar DNA methylation changes within a murine OA model, suggesting that aging may induce pro-OA epigenetic "poising" within articular cartilage. Future research should focus on confirming and expanding these findings to other environmental OA risk factors, including obesity, as well as determining late OA changes in mice.

Identifiers

PMID36253145
PMCPMC9746664
OpenAlexW4306654690

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.