Evidence map›Paper›PMID 36252283›Full record

ArticleDiagnostic microbiology and infectious disease2023

Quantitative analysis of different respiratory specimens on two automated test systems for detection of SARS-CoV-2 RNA.

Nadine Lübke, Katharina Repges, Christopher Menne, Andreas Walker, Björn-Erik O Jensen, Noemi F Freise, Smaranda Gliga, Simon B Eickhoff, Hans Martin Bosse, Ortwin Adams and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Diagnostic microbiology and infectious disease, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Nadine LübkeInstitute of Virology, Medical Faculty, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany. Electronic address: nadine.luebke@med.uni-duesseldorf.de.
Katharina RepgesInstitute of Virology, Medical Faculty, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany.
Christopher MenneInstitute of Virology, Medical Faculty, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany.
Andreas WalkerInstitute of Virology, Medical Faculty, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany.
Björn-Erik O JensenDepartment of Gastroenterology, Hepatology and Infectious Diseases, University Hospital, Medical Faculty, Heinrich-Heine-University Düsseldorf, Germany.
Noemi F FreiseDepartment of Gastroenterology, Hepatology and Infectious Diseases, University Hospital, Medical Faculty, Heinrich-Heine-University Düsseldorf, Germany.
Smaranda GligaDepartment of Gastroenterology, Hepatology and Infectious Diseases, University Hospital, Medical Faculty, Heinrich-Heine-University Düsseldorf, Germany.
Simon B EickhoffInstitute of Systems Neuroscience, Medical Faculty, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany; Institute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Centre Jülich, Jülich, Germany.
Hans Martin BosseDepartment of General Pediatrics, Neonatology and Pediatric Cardiology, University Children´s Hospital, University Hospital, Medical Faculty, Heinrich-Heine-University Düsseldorf, Germany.
Ortwin AdamsInstitute of Virology, Medical Faculty, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany.
Jörg TimmInstitute of Virology, Medical Faculty, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany.
Heinrich Heine University Düsseldorf · DEDüsseldorf University Hospital · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular testing of SARS-CoV-2 RNA is essential during the pandemic. Here, we compared the results of different respiratory specimens including anterior nasal swabs, pharyngeal swabs, saliva swabs, and gargle lavage samples to nasopharyngeal swabs on two automated SARS-CoV-2 test systems. Samples were collected and tested simultaneously from a total of 36 hospitalized symptomatic COVID-19 patients. Detection and quantification of SARS-CoV-2 was performed on cobas®6800 (Roche) and NeuMoDx™ (Qiagen) systems. Both assays showed reliable detection and quantification of SARS-CoV-2 RNA, with nasopharyngeal swabs showing the highest sensitivity. SARS-CoV-2 RNA concentrations in other respiratory specimens were lower (mean 2.5 log10 copies/ml) or even undetectable in up to 20%. These data clearly indicate that not all respiratory materials are equally suitable for the management of hospitalized patients, especially, in the late phase of COVID-19, when the viral phase subsides and inflammation becomes the predominant factor, making detection of even lower viral loads increasingly important.

Indexed as

COVID-19SARS-CoV-2COVID-19 TestingHumansNasopharynxPandemicsRNA, ViralSalivaSpecimen HandlingRNA, ViralAutomated test systemsCOVID-19Less invasive respiratory specimensSARS-CoV-2SARS-CoV-2 quantification

Identifiers

PMID36252283
PMCPMC9411103
OpenAlexW4293216960

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.