Evidence map›Paper›PMID 36252043›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Geometrically programmed self-limited assembly of tubules using DNA origami colloids.

Daichi Hayakawa, Thomas E Videbaek, Douglas M Hall, Huang Fang, Christian Sigl, Elija Feigl, Hendrik Dietz, Seth Fraden, Michael F Hagan, Gregory M Grason and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. A DNA-encoded recipe to direct multistage colloidal assembly.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. From toroids to helical tubules: Kirigami-inspired programmable assembly of two-periodic curved crystals from DNA origami.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
  6. Measuring multisubunit mechanics of geometrically programmed colloidal assemblies via cryo-EM multi-body refinement.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Magnetic decoupling as a proofreading strategy for high-yield, time-efficient microscale self-assembly.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
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  11. Article
  12. Article
  13. Article
  14. Chemical composition from photos: Dried solution drops reveal a morphogenetic tree.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
  16. Article
  17. Limits of economy and fidelity for programmable assembly of size-controlled triply periodic polyhedra.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Hierarchical assembly is more robust than egalitarian assembly in synthetic capsids.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Daichi HayakawaMartin A. Fisher School of Physics, Brandeis University, Waltham, MA 02453.ORCID 0000-0002-2783-5943
Thomas E VidebaekMartin A. Fisher School of Physics, Brandeis University, Waltham, MA 02453.
Douglas M HallDepartment of Polymer Science and Engineering, University of Massachusetts, Amherst, MA 01003.ORCID 0000-0003-2829-6272
Huang FangMartin A. Fisher School of Physics, Brandeis University, Waltham, MA 02453.ORCID 0000-0001-5802-9330
Christian SiglDepartment of Physics, Technical University of Munich, 80333 Munich, Germany.
Elija FeiglDepartment of Physics, Technical University of Munich, 80333 Munich, Germany.
Hendrik DietzDepartment of Physics, Technical University of Munich, 80333 Munich, Germany.ORCID 0000-0003-1270-3662
Seth FradenMartin A. Fisher School of Physics, Brandeis University, Waltham, MA 02453.ORCID 0000-0002-2420-9939
Michael F HaganMartin A. Fisher School of Physics, Brandeis University, Waltham, MA 02453.ORCID 0000-0002-9211-2434
Gregory M GrasonDepartment of Polymer Science and Engineering, University of Massachusetts, Amherst, MA 01003.ORCID 0000-0001-5479-9370
W Benjamin RogersMartin A. Fisher School of Physics, Brandeis University, Waltham, MA 02453.ORCID 0000-0001-8587-8215

Funding

Computational modeling of viral capsid and bacterial microcompartment assemblyR01GM108021 · NIGMS · BRANDEIS UNIVERSITY · PI HAGAN, MICHAEL F · 2013 to 2021
$2.7M
NIGMS NIH HHS R01 GM108021
6 · The paper itself

Abstract

Self-assembly is one of the most promising strategies for making functional materials at the nanoscale, yet new design principles for making self-limiting architectures, rather than spatially unlimited periodic lattice structures, are needed. To address this challenge, we explore the tradeoffs between addressable assembly and self-closing assembly of a specific class of self-limiting structures: cylindrical tubules. We make triangular subunits using DNA origami that have specific, valence-limited interactions and designed binding angles, and we study their assembly into tubules that have a self-limited width that is much larger than the size of an individual subunit. In the simplest case, the tubules are assembled from a single component by geometrically programming the dihedral angles between neighboring subunits. We show that the tubules can reach many micrometers in length and that their average width can be prescribed through the dihedral angles. We find that there is a distribution in the width and the chirality of the tubules, which we rationalize by developing a model that considers the finite bending rigidity of the assembled structure as well as the mechanism of self-closure. Finally, we demonstrate that the distributions of tubules can be further sculpted by increasing the number of subunit species, thereby increasing the assembly complexity, and demonstrate that using two subunit species successfully reduces the number of available end states by half. These results help to shed light on the roles of assembly complexity and geometry in self-limited assembly and could be extended to other self-limiting architectures, such as shells, toroids, or triply periodic frameworks.

Indexed as

DNANanostructuresColloidsNanotechnologyNucleic Acid ConformationColloidsDNAaddressable assemblycolloidsDNA origamiself-assemblyself-limited assembly

Identifiers

PMID36252043
PMCPMC9618141

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.