Evidence map›Paper›PMID 36251127›Full record

ArticleJournal of assisted reproduction and genetics2022

Clinical, cytogenomic, and molecular characterization of isodicentric Y-chromosome and prediction of testicular sperm retrieval outcomes in azoospermic and severe oligozoospermic infertile men.

Ummet Abur, Sezgin Gunes, Neslihan Hekim, Omer Salih Akar, Engin Altundag, Ramazan Asci

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ummet AburDepartment of Medical Genetics, Faculty of Medicine, Ondokuz Mayis University, Samsun, Turkey.ORCID http://orcid.org/0000-0002-4811-9321
Sezgin GunesDepartment of Molecular Medicine, Graduate Institute, Ondokuz Mayis University, Samsun, Turkey. sgunes@omu.edu.tr.ORCID http://orcid.org/0000-0002-3103-6482
Neslihan HekimDepartment of Medical Biology, Faculty of Medicine, Ondokuz Mayis University, Samsun, 55139, Turkey.ORCID http://orcid.org/0000-0002-8470-2848
Omer Salih AkarDepartment of Medical Genetics, Faculty of Medicine, Ondokuz Mayis University, Samsun, Turkey.ORCID http://orcid.org/0000-0001-5686-2185
Engin AltundagDepartment of Medical Genetics, Faculty of Medicine, Ondokuz Mayis University, Samsun, Turkey.ORCID http://orcid.org/0000-0001-8841-1426
Ramazan AsciDepartment of Molecular Medicine, Graduate Institute, Ondokuz Mayis University, Samsun, Turkey.ORCID http://orcid.org/0000-0002-2119-8963
Ondokuz Mayıs University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeSex chromosome abnormalities are associated with male infertility. The aim of this study was to characterize the clinical, cytogenetic, and molecular findings of 12 infertile men with isodicentric Y-chromosome [idic(Y)] abnormalities diagnosed over a period of 13 years. MATERIALS AND

methodsChromosomal analyses of peripheral blood samples were done using standard procedures. Fluorescence in situ hybridization (FISH) analysis was performed on metaphase spreads of the patients. Multiplex polymerase chain reaction (PCR) using several sequence-tagged site (STS) primer sets within the long arm of Y-chromosome was used to detect AZF deletions.The breakpoints and copy number variations (CNV) were identified by array comparative genomic hybridization analysis (aCGH) analysis.The short-stature homeobox (SHOX) gene deletions were verified using multiplex ligation-dependent probe amplification (MLPA) analysis.

resultsTwelve infertile men were diagnosed cytogenetically with idic(Y). The karyotypes of two of the patients were non-mosaic, and the remaining karyotypes showed various degrees of mosaicism. SHOX gene deletion was found in two of the four patients with short stature, and the remaining two patients had shown a 45,X dominant cell line (33.3%). The most common breakpoints for idic(Yq) and idic(Yp) were found to be in Yq11.222 and Yp11.32, respectively. Semen analysis of ten patients (83.3%) demonstrated azoospermia, and the remaining two patients (16.7%) showed severe oligoasthenoteratozoospermia (OAT). In total, 33% (4/12) of idic(Y) patients with or without microsurgical testicular sperm extraction (microTESE) had sperm retrieval.

conclusionsTwelve patients with idic(Y) and different breakpoints of Y-chromosome were characterized using multiple detection strategies. Sperm retrieval outcomes of patients either with idic(Yp) or idic(Yq) showed the possibility to find sperm by microTESE.

Indexed as

AzoospermiaInfertility, MaleChromosome DeletionChromosomes, Human, YComparative Genomic HybridizationDNA Copy Number VariationsHumansIn Situ Hybridization, FluorescenceMaleMosaicismSemenSex Chromosome AberrationsSperm RetrievalCGHMale infertilitySHOXSperm retrievalY-chromosome

Identifiers

PMID36251127
PMCPMC9790839
OpenAlexW4306405301

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.