Evidence map›Paper›PMID 36249508›Full record

ArticleJournal of applied crystallography2022

A comparison of deep-learning-based inpainting techniques for experimental X-ray scattering.

Tanny Chavez, Eric J Roberts, Petrus H Zwart, Alexander Hexemer

Abstract read
In one paragraph

Article in Journal of applied crystallography, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. DLSIA: Deep Learning for Scientific Image Analysis.Journal of applied crystallography · 2024
    Article
  4. Introduction to the virtual collection of papers onJournal of applied crystallography · 2024
    Article
  5. Article
  6. Article
  7. MLExchange: A web-based platform enabling exchangeable machine learning workflows for scientific studies.Annual Workshop on Extreme-scale Experiment-in-the-Loop Computing : XLOOP. Annual Workshop on Extreme-scale Experiment-in-the-Loop Computing · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Tanny ChavezAdvanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Eric J RobertsMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Petrus H ZwartMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.ORCID https://orcid.org/0000-0003-3315-4092
Alexander HexemerAdvanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.ORCID https://orcid.org/0000-0002-5269-0125

Funding

New Tools for Experimental Phasing of Twinned Diffraction DataR21GM129649 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI ZWART, PETRUS H · 2019 to 2020
$556k
NIGMS NIH HHS R21 GM129649
6 · The paper itself

Abstract

The implementation is proposed of image inpainting techniques for the reconstruction of gaps in experimental X-ray scattering data. The proposed methods use deep learning neural network architectures, such as convolutional autoencoders, tunable U-Nets, partial convolution neural networks and mixed-scale dense networks, to reconstruct the missing information in experimental scattering images. In particular, the recovered pixel intensities are evaluated against their corresponding ground-truth values using the mean absolute error and the correlation coefficient metrics. The results demonstrate that the proposed methods achieve better performance than traditional inpainting algorithms such as biharmonic functions. Overall, tunable U-Net and mixed-scale dense network architectures achieved the best reconstruction performance among all the tested algorithms, with correlation coefficient scores greater than 0.9980.

Indexed as

deep learningimage inpaintingmixed-scale dense networkstunable U-NetsX-ray scattering

Identifiers

PMID36249508
PMCPMC9533742

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.