Evidence map›Paper›PMID 36248623›Full record

ArticleFrontiers in artificial intelligence2022

The precision medicine process for treating rare disease using the artificial intelligence tool mediKanren.

Aleksandra Foksinska, Camerron M Crowder, Andrew B Crouse, Jeff Henrikson, William E Byrd, Gregory Rosenblatt, Michael J Patton, Kaiwen He, Thi K Tran-Nguyen, Marissa Zheng and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in artificial intelligence, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. AΙ-Driven Drug Repurposing: Applications and Challenges.Medicines (Basel, Switzerland) · 2025
    Review
  6. Article
  7. Review
  8. Article
  9. Functional genomics and small molecules in mitochondrial neurodevelopmental disorders.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2024
    Review
  10. Review
  11. Variants inFrontiers in pediatrics · 2024
    Review
  12. Review
  13. Article
  14. Literature-based predictions of Mendelian disease therapies.American journal of human genetics · 2023
    Article
  15. Review
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Aleksandra FoksinskaThe Hugh Kaul Precision Medicine Institute, University of Alabama at Birmingham, Birmingham, AL, United States.
Camerron M CrowderThe Hugh Kaul Precision Medicine Institute, University of Alabama at Birmingham, Birmingham, AL, United States.
Andrew B CrouseThe Hugh Kaul Precision Medicine Institute, University of Alabama at Birmingham, Birmingham, AL, United States.
Jeff HenriksonGroovescale, Seattle, WA, United States.
William E ByrdThe Hugh Kaul Precision Medicine Institute, University of Alabama at Birmingham, Birmingham, AL, United States.
Gregory RosenblattThe Hugh Kaul Precision Medicine Institute, University of Alabama at Birmingham, Birmingham, AL, United States.
Michael J PattonThe Hugh Kaul Precision Medicine Institute, University of Alabama at Birmingham, Birmingham, AL, United States.
Kaiwen HeThe Hugh Kaul Precision Medicine Institute, University of Alabama at Birmingham, Birmingham, AL, United States.
Thi K Tran-NguyenThe Hugh Kaul Precision Medicine Institute, University of Alabama at Birmingham, Birmingham, AL, United States.
Marissa ZhengDepartment of Molecular and Cellular Biology, Harvard College, Cambridge, MA, United States.
Stephen A RamseySchool of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, United States.
Nada AminJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, United States.
John OsborneDepartment of Medicine, Informatics Institute, University of Alabama at Birmingham, Birmingham, AL, United States.
UAB Precision Medicine Institute
Matthew MightThe Hugh Kaul Precision Medicine Institute, University of Alabama at Birmingham, Birmingham, AL, United States.
University of Alabama at Birmingham · USHarvard University · USOregon State University · US

Funding

UAB Pilot Center for Precision Animal Modeling (C-PAM) - Resource and Service SectionU54OD030167 · OD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Bradley K. Yoder · 2020 to 2026
$15.3M
NIH HHS U54 OD030167
6 · The paper itself

Abstract

There are over 6,000 different rare diseases estimated to impact 300 million people worldwide. As genetic testing becomes more common practice in the clinical setting, the number of rare disease diagnoses will continue to increase, resulting in the need for novel treatment options. Identifying treatments for these disorders is challenging due to a limited understanding of disease mechanisms, small cohort sizes, interindividual symptom variability, and little commercial incentive to develop new treatments. A promising avenue for treatment is drug repurposing, where FDA-approved drugs are repositioned as novel treatments. However, linking disease mechanisms to drug action can be extraordinarily difficult and requires a depth of knowledge across multiple fields, which is complicated by the rapid pace of biomedical knowledge discovery. To address these challenges, The Hugh Kaul Precision Medicine Institute developed an artificial intelligence tool, mediKanren, that leverages the mechanistic insight of genetic disorders to identify therapeutic options. Using knowledge graphs, mediKanren enables an efficient way to link all relevant literature and databases. This tool has allowed for a scalable process that has been used to help over 500 rare disease families. Here, we provide a description of our process, the advantages of mediKanren, and its impact on rare disease patients.

Indexed as

artificial intelligencebiomedical reasoningdrug repurposingprecision medicinerare disease

Identifiers

PMID36248623
PMCPMC9562701
OpenAlexW4300960771

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.