Evidence map›Paper›PMID 36246561›Full record

ArticleDisease markers2022

Five EMT-Related Gene Signatures Predict Acute Myeloid Leukemia Patient Outcome.

Jing Qi, Jiawei Yan, Muhammad Idrees, Saeedah Musaed Almutairi, Rabab Ahmed Rasheed, Usama Ahmed Hussein, Mostafa A Abdel-Maksoud, Ran Wang, Jun Huang, Chen Huang and 4 more

Abstract read
In one paragraph

Article in Disease markers, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Epithelial-Mesenchymal Transition in Acute Leukemias.International journal of molecular sciences · 2024
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jing QiDepartment of Hematology, The First Affiliated Hospital of Wannan Medical College, Wuhu, Anhui 241001, China.
Jiawei YanDepartment of Hematology, The First Affiliated Hospital of Wannan Medical College, Wuhu, Anhui 241001, China.
Muhammad IdreesPrimary and Secondary Health Care Department, Lahore, Pakistan.
Saeedah Musaed AlmutairiDepartment of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia.
Rabab Ahmed RasheedHistology & Cell Biology Department, Faculty of Medicine, King Salman International University, South Sinai, Egypt.
Usama Ahmed HusseinAnatomy Department, Faculty of Medicine, King Salman International University, South Sinai, Egypt.
Mostafa A Abdel-MaksoudDepartment of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia.
Ran WangDepartment of Hematology, The First Affiliated Hospital of Wannan Medical College, Wuhu, Anhui 241001, China.
Jun HuangDepartment of Hematology, The First Affiliated Hospital of Wannan Medical College, Wuhu, Anhui 241001, China.
Chen HuangDepartment of Hematology, The First Affiliated Hospital of Wannan Medical College, Wuhu, Anhui 241001, China.
Nana WangDepartment of Hematology, The First Affiliated Hospital of Wannan Medical College, Wuhu, Anhui 241001, China.
Dongping HuangDepartment of Hematology, The First Affiliated Hospital of Wannan Medical College, Wuhu, Anhui 241001, China.ORCID https://orcid.org/0000-0003-3931-8385
Yuan HuiPublic Health Center, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shanxi, China.ORCID https://orcid.org/0000-0002-5528-5811
Chen LiDepartment of Biology, Chemistry, Pharmacy, Free University of Berlin, Berlin 14195, Germany.ORCID https://orcid.org/0000-0002-6895-2759

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: The epithelial mesenchymal transition (EMT) gene has been shown to be significantly associated with the prognosis of solid tumors; however, there is a lack of models for the EMT gene to predict the prognosis of AML patients. Methods: First, we downloaded clinical data and raw transcriptome sequencing data from the TCGA database of acute myeloid leukemia (AML) patients. All currently confirmed EMT-related genes were obtained from the dbEMT 2.0 database, and 30% of the TCGA data were randomly selected as the test set. Univariate Cox regression analysis, random forest, and lasso regression were used to optimize the number of genes for model construction, and multivariate Cox regression was used for model construction. Area under the ROC curve was used to assess the efficacy of the model application, and the internal validation set was used to assess the stability of the model. Results: A total of 173 AML samples were downloaded, and a total of 1184 EMT-related genes were downloaded. The results of univariate batch Cox regression analysis suggested that 212 genes were associated with patient prognosis, random forest and lasso regression yielded 18 and 8 prognosis-related EMT genes, respectively, and the results of multifactorial COX regression model suggested that 5 genes, CBR1, HS3ST3B1, LIMA1, MIR573, and PTP4A3, were considered as independent risk factors affecting patient prognosis. The model ROC results suggested that the area under the curve was 0.868 and the internal validation results showed that the area under the curve was 0.815. Conclusion: During this study, we constructed a signature model of five EMT-related genes to predict overall survival in patients with AML; it will provide a useful tool for clinical decision making.

Indexed as

Leukemia, Myeloid, AcuteMicroRNAsCytoskeletal ProteinsEpithelial-Mesenchymal TransitionGene Expression ProfilingHumansNeoplasm ProteinsPrognosisProtein Tyrosine PhosphatasesTranscriptomeCytoskeletal ProteinsLIMA1 protein, humanMicroRNAsMIRN573 microRNA, humanNeoplasm ProteinsProtein Tyrosine PhosphatasesPTP4A3 protein, human

Identifiers

PMID36246561
PMCPMC9568336

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.