Evidence map›Paper›PMID 36245428›Full record

ArticleEMBO reports2022

Dynamic chromosomal interactions and control of heterochromatin positioning by Ki-67.

Tom van Schaik, Stefano G Manzo, Athanasios E Vouzas, Ning Qing Liu, Hans Teunissen, Elzo de Wit, David M Gilbert, Bas van Steensel

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

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  10. The role of epigenetics in cancer: From pathways to the clinic.Journal of family medicine and primary care · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Tom van SchaikDivision of Gene Regulation and Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0001-7850-5074
Stefano G ManzoDivision of Gene Regulation and Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0002-6911-3527
Athanasios E VouzasDepartment of Biological Science, The Florida State University, Tallahassee, FL, USA.
Ning Qing LiuDivision of Gene Regulation and Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0002-3151-638X
Hans TeunissenDivision of Gene Regulation and Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Elzo de WitDivision of Gene Regulation and Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0003-2883-1415
David M GilbertDepartment of Biological Science, The Florida State University, Tallahassee, FL, USA.ORCID 0000-0001-8087-9737
Bas van SteenselDivision of Gene Regulation and Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0002-0284-0404
The Netherlands Cancer Institute · NLFlorida State University · USErasmus MC · NL

Funding

Genome Plasticity during ES Cell Differentiation to Neural LineagesR01GM083337 · NIGMS · SAN DIEGO BIOMEDICAL RESEARCH INSTITUTE · PI David M Gilbert · 2007 to 2026
$6.1M
NIGMS NIH HHS R01 GM083337
6 · The paper itself

Abstract

Ki-67 is a chromatin-associated protein with a dynamic distribution pattern throughout the cell cycle and is thought to be involved in chromatin organization. The lack of genomic interaction maps has hampered a detailed understanding of its roles, particularly during interphase. By pA-DamID mapping in human cell lines, we find that Ki-67 associates with large genomic domains that overlap mostly with late-replicating regions. Early in interphase, when Ki-67 is present in pre-nucleolar bodies, it interacts with these domains on all chromosomes. However, later in interphase, when Ki-67 is confined to nucleoli, it shows a striking shift toward small chromosomes. Nucleolar perturbations indicate that these cell cycle dynamics correspond to nucleolar maturation during interphase, and suggest that nucleolar sequestration of Ki-67 limits its interactions with larger chromosomes. Furthermore, we demonstrate that Ki-67 does not detectably control chromatin-chromatin interactions during interphase, but it competes with the nuclear lamina for interaction with late-replicating DNA, and it controls replication timing of (peri)centromeric regions. Together, these results reveal a highly dynamic choreography of genome interactions and roles for Ki-67 in heterochromatin organization.

Indexed as

GenomicsHeterochromatinHumansKi-67 AntigenHeterochromatinKi-67 Antigengenome organizationMKI67nuclear laminanucleoluspA-DamID

Identifiers

PMID36245428
PMCPMC9724667
OpenAlexW4306399518

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.