Evidence map›Paper›PMID 36245269›Full record

ArticleThe EMBO journal2022

Cryo-EM structures of perforin-2 in isolation and assembled on a membrane suggest a mechanism for pore formation.

Xiulian Yu, Tao Ni, George Munson, Peijun Zhang, Robert J C Gilbert

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. For Better or Worse: The Impact of Necrotic Cell Death Modalities.Advances in experimental medicine and biology · 2025
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Xiulian YuDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0002-8853-1775
Tao NiDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0001-7268-0306
George MunsonDepartment of Microbiology and Immunology, University of Miami Miller School of Medicine, Miami, FL, USA.ORCID 0000-0002-3692-8199
Peijun ZhangDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0003-1803-691X
Robert J C GilbertDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0001-9336-5604
Centre for Human Genetics · GBAcademy of Medical Sciences · GBUniversity of Miami · US

Funding

Killing of intracellular bacteria by Perforin-2R01AI110810 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MUNSON, GEORGE PATRICK · 2015 to 2019
$2.1M
Analyzing the expression and activation of Perforin-2 -a bactericidal pore-forming protein- with single domain antibodiesR21AI156567 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MUNSON, GEORGE PATRICK · 2021 to 2022
$422k
Identification of Protein-Protein Interactions and Processing Events That Traffic and Activate the Bactericidal Pore-Forming Protein Perforin-2R21AI159794 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MUNSON, GEORGE PATRICK · 2021 to 2022
$422k
Biotechnology and Biological Sciences Research Council BB/S003339/1Medical Research Council MC_PC_17137Medical Research Council MR/N000331/1NIAID NIH HHS R01 AI110810NIAID NIH HHS R21 AI156567NIAID NIH HHS R21 AI159794Wellcome Trust 060208/Z/00/ZWellcome Trust 090532/Z/09/ZWellcome Trust 093305/Z/10/ZWellcome Trust 206422/Z/17/Z
6 · The paper itself

Abstract

Perforin-2 (PFN2, MPEG1) is a key pore-forming protein in mammalian innate immunity restricting intracellular bacteria proliferation. It forms a membrane-bound pre-pore complex that converts to a pore-forming structure upon acidification; but its mechanism of conformational transition has been debated. Here we used cryo-electron microscopy, tomography and subtomogram averaging to determine structures of PFN2 in pre-pore and pore conformations in isolation and bound to liposomes. In isolation and upon acidification, the pre-assembled complete pre-pore rings convert to pores in both flat ring and twisted conformations. On membranes, in situ assembled PFN2 pre-pores display various degrees of completeness; whereas PFN2 pores are mainly incomplete arc structures that follow the same subunit packing arrangements as found in isolation. Both assemblies on membranes use their P2 β-hairpin for binding to the lipid membrane surface. Overall, these structural snapshots suggest a molecular mechanism for PFN2 pre-pore to pore transition on a targeted membrane, potentially using the twisted pore as an intermediate or alternative state to the flat conformation, with the capacity to cause bilayer distortion during membrane insertion.

Indexed as

LiposomesMammalsAnimalsCell MembraneCryoelectron MicroscopyMembranesPerforinLiposomesPerforincryo-electron tomographycryo-EMperforin-2pore-forming proteinsubtomogram averaging

Identifiers

PMID36245269
PMCPMC9713709
OpenAlexW4306392709

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.