Evidence map›Paper›PMID 36243826›Full record

ArticleScientific reports2022

Lateral confined growth of cells activates Lef1 dependent pathways to regulate cell-state transitions.

Luezhen Yuan, Bibhas Roy, Prasuna Ratna, Caroline Uhler, G V Shivashankar

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Antisense Oligonucleotide-MediatedAnimals : an open access journal from MDPI · 2026
    Article
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  3. Article
  4. Article
  5. Knockouts ofiScience · 2024
    Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Luezhen YuanDivision of Biology and Chemistry, Paul Scherrer Institut, 5232, Villigen, Switzerland.
Bibhas RoyDivision of Biology and Chemistry, Paul Scherrer Institut, 5232, Villigen, Switzerland.
Prasuna RatnaMechanobiology Institute, National University of Singapore, Singapore, 117411, Singapore.
Caroline UhlerMassachusetts Institute of Technology, Cambridge, MA, USA.
G V ShivashankarDivision of Biology and Chemistry, Paul Scherrer Institut, 5232, Villigen, Switzerland. shiva.gvs@gmail.com.
National University of Singapore · SGETH Zurich · CHMassachusetts Institute of Technology · USPaul Scherrer Institute · CH

Funding

Causal Representation Learning for the Spatial Analysis of Transcriptomic and Imaging Data in Tissue ContextsDP2AT012345 · NCCIH · BROAD INSTITUTE, INC. · PI UHLER, CAROLINE · 2022 to 2025
$2.3M
NCCIH NIH HHS DP2 AT012345
6 · The paper itself

Abstract

Long-term sustained mechano-chemical signals in tissue microenvironment regulate cell-state transitions. In recent work, we showed that laterally confined growth of fibroblasts induce dedifferentiation programs. However, the molecular mechanisms underlying such mechanically induced cell-state transitions are poorly understood. In this paper, we identify Lef1 as a critical somatic transcription factor for the mechanical regulation of de-differentiation pathways. Network optimization methods applied to time-lapse RNA-seq data identify Lef1 dependent signaling as potential regulators of such cell-state transitions. We show that Lef1 knockdown results in the down-regulation of fibroblast de-differentiation and that Lef1 directly interacts with the promoter regions of downstream reprogramming factors. We also evaluate the potential upstream activation pathways of Lef1, including the Smad4, Atf2, NFkB and Beta-catenin pathways, thereby identifying that Smad4 and Atf2 may be critical for Lef1 activation. Collectively, we describe an important mechanotransduction pathway, including Lef1, which upon activation, through progressive lateral cell confinement, results in fibroblast de-differentiation.

Indexed as

beta CateninMechanotransduction, CellularCell DifferentiationLymphoid Enhancer-Binding Factor 1Signal TransductionTranscription Factorsbeta CateninLymphoid Enhancer-Binding Factor 1Transcription Factors

Identifiers

PMID36243826
PMCPMC9569372
OpenAlexW4306291665

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.