ArticleScientific reports2022
Salt tolerance QTLs of an endemic rice landrace, Horkuch at seedling and reproductive stages.
Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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10 citing papers in PubMed, 19 citations in OpenAlex.
- QTL mapping and haplotype analysis reveal candidate genes for seedling-stage salinity tolerance in rice.Frontiers in plant science · 2026Article
- Regulatory networks and molecular mechanisms underlying salt stress tolerance in rice.Frontiers in plant science · 2026Review
- Epigenetic Regulation of Salt Stress Responses in Rice: Mechanisms and Prospects for Enhancing Tolerance.Epigenomes · 2025Review
- Rice Adaptation to Abiotic Stresses Caused by Soil Inorganic Elements.International journal of molecular sciences · 2025Review
- Cowpea (Vigna unguiculata L. Walp.) landraces in Mozambique and neighbouring Southern African countries harbour genetic loci with potential for climate adaptation.Communications biology · 2025Article
- QTLs and Genes for Salt Stress Tolerance: A Journey from Seed to Seed Continued.Plants (Basel, Switzerland) · 2024Review
- Crop Landraces and Indigenous Varieties: A Valuable Source of Genes for Plant Breeding.Plants (Basel, Switzerland) · 2024Review
- Genome-Wide Association Study Identified Candidate Genes for Alkalinity Tolerance in Rice.Plants (Basel, Switzerland) · 2023Article
- Paired growth of cultivated and halophytic wild rice under salt stress induces bacterial endophytes and gene expression responses.Frontiers in plant science · 2023Article
- Functional genomic analysis of KFrontiers in plant science · 2022Article
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Authors and funding
9 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Salinity has a significant negative impact on production of rice. To cope with the increased soil salinity due to climate change, we need to develop salt tolerant rice varieties that can maintain their high yield. Rice landraces indigenous to coastal Bangladesh can be a great resource to study the genetic basis of salt adaptation. In this study, we implemented a QTL analysis framework with a reciprocal mapping population developed from a salt tolerant landrace Horkuch and a high yielding rice variety IR29. Our aim was to detect genetic loci that contributes to the salt adaptive responses of the two different developmental stages of rice which are very sensitive to salinity stress. We identified 14 QTLs for 9 traits and found that most are unique to specific developmental stages. In addition, we detected a significant effect of the cytoplasmic genome on the QTL model for some traits such as leaf total potassium and filled grain weight. This underscores the importance of considering cytoplasm-nuclear interaction for breeding programs. Finally, we identified QTLs co-localization for multiple traits that highlights the possible constraint of multiple QTL selection for breeding programs due to different contributions of a donor allele for different traits.
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