Evidence map›Paper›PMID 36243713›Full record

ArticleNature communications2022

Discriminating cross-reactivity in polyclonal IgG1 responses against SARS-CoV-2 variants of concern.

Danique M H van Rijswijck, Albert Bondt, Max Hoek, Karlijn van der Straten, Tom G Caniels, Meliawati Poniman, Dirk Eggink, Chantal Reusken, Godelieve J de Bree, Rogier W Sanders and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Danique M H van Rijswijck *Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, Utrecht, 3584 CH, The Netherlands.ORCID 0000-0003-1377-9992
Albert Bondt *Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, Utrecht, 3584 CH, The Netherlands.ORCID 0000-0002-0985-7903
Max HoekBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, Utrecht, 3584 CH, The Netherlands.
Karlijn van der StratenDepartment of Medical Microbiology, Amsterdam UMC, University of Amsterdam, Amsterdam Institute for Infection and Immunity, Meibergdreef 9, Amsterdam, 1105 AZ, The Netherlands.
Tom G CanielsDepartment of Medical Microbiology, Amsterdam UMC, University of Amsterdam, Amsterdam Institute for Infection and Immunity, Meibergdreef 9, Amsterdam, 1105 AZ, The Netherlands.ORCID 0000-0001-9580-157X
Meliawati PonimanDepartment of Medical Microbiology, Amsterdam UMC, University of Amsterdam, Amsterdam Institute for Infection and Immunity, Meibergdreef 9, Amsterdam, 1105 AZ, The Netherlands.
Dirk EgginkNational Institute for Public Health and the Environment, RIVM, Antonie van Leeuwenhoeklaan 9, 3721, MA, Bilthoven, The Netherlands.
Chantal ReuskenNational Institute for Public Health and the Environment, RIVM, Antonie van Leeuwenhoeklaan 9, 3721, MA, Bilthoven, The Netherlands.ORCID 0000-0003-4605-9174
Godelieve J de BreeDepartment of Internal Medicine, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam Institute for Infection and Immunity, Meibergdreef 9, Amsterdam, 1105 AZ, The Netherlands.
Rogier W SandersDepartment of Medical Microbiology, Amsterdam UMC, University of Amsterdam, Amsterdam Institute for Infection and Immunity, Meibergdreef 9, Amsterdam, 1105 AZ, The Netherlands.ORCID 0000-0002-2324-8573
Marit J van GilsDepartment of Medical Microbiology, Amsterdam UMC, University of Amsterdam, Amsterdam Institute for Infection and Immunity, Meibergdreef 9, Amsterdam, 1105 AZ, The Netherlands.ORCID 0000-0003-3422-8161
Albert J R HeckBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, Utrecht, 3584 CH, The Netherlands. a.j.r.heck@uu.nl.ORCID 0000-0002-2405-4404
Amsterdam University Medical Centers · NLUtrecht University · NLNational Institute for Public Health and the Environment · NL

Funding

Bill & Melinda Gates Foundation INV-024617
6 · The paper itself

Abstract

Existing assays to measure antibody cross-reactivity against different SARS-CoV-2 spike (S) protein variants lack the discriminatory power to provide insights at the level of individual clones. Using a mass spectrometry-based approach we are able to monitor individual donors' IgG1 clonal responses following a SARS-CoV-2 infection. We monitor the plasma clonal IgG1 profiles of 8 donors who had experienced an infection by either the wild type Wuhan Hu-1 virus or one of 3 VOCs (Alpha, Beta and Gamma). In these donors we chart the full plasma IgG1 repertoires as well as the IgG1 repertoires targeting the SARS-CoV-2 spike protein trimer VOC antigens. The plasma of each donor contains numerous anti-spike IgG1 antibodies, accounting for <0.1% up to almost 10% of all IgG1s. Some of these antibodies are VOC-specific whereas others do recognize multiple or even all VOCs. We show that in these polyclonal responses, each clone exhibits a distinct cross-reactivity and also distinct virus neutralization capacity. These observations support the need for a more personalized look at the antibody clonal responses to infectious diseases.

Indexed as

COVID-19SARS-CoV-2Antibodies, NeutralizingAntibodies, ViralAntigens, ViralHumansImmunoglobulin GSpike Glycoprotein, CoronavirusAntibodies, NeutralizingAntibodies, ViralAntigens, ViralImmunoglobulin GSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID36243713
PMCPMC9568977
OpenAlexW4306292157

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.