Evidence map›Paper›PMID 36242515›Full record

ArticleBiophysical journal2022

Single-molecule experiments reveal the elbow as an essential folding guide in SMC coiled-coil arms.

Marvin Freitag, Sigrun Jaklin, Francesco Padovani, Ecaterina Radzichevici, Sarah Zernia, Kurt M Schmoller, Johannes Stigler

Open access · greenAbstract read
In one paragraph

Article in Biophysical journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Marvin FreitagGene Center Munich, Ludwig-Maximilians-Universität München, Munich, Germany.
Sigrun JaklinGene Center Munich, Ludwig-Maximilians-Universität München, Munich, Germany.
Francesco PadovaniInstitute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.
Ecaterina RadzicheviciInstitute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.
Sarah ZerniaGene Center Munich, Ludwig-Maximilians-Universität München, Munich, Germany.
Kurt M SchmollerInstitute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany; German Center for Diabetes Research (DZD), Neuherberg, Germany.
Johannes StiglerGene Center Munich, Ludwig-Maximilians-Universität München, Munich, Germany. Electronic address: stigler@genzentrum.lmu.de.
Ludwig-Maximilians-Universität München · DEHelmholtz Zentrum München · DE

Funding

European Research Council
6 · The paper itself

Abstract

Structural maintenance of chromosome (SMC) complexes form ring-like structures through exceptional elongated coiled-coils (CCs). Recent studies found that variable CC conformations, including open and collapsed forms, which might result from discontinuities in the CC, facilitate the diverse functions of SMCs in DNA organization. However, a detailed description of the SMC CC architecture is still missing. Here, we study the structural composition and mechanical properties of SMC proteins with optical tweezers unfolding experiments using the isolated Psm3 CC as a model system. We find a comparatively unstable protein with three unzipping intermediates, which we could directly assign to CC features by crosslinking experiments and state-of-the-art prediction software. Particularly, the CC elbow is shown to be a flexible, potentially non-structured feature, which divides the CC into sections, induces a pairing shift from one CC strand to the other and could facilitate large-scale conformational changes, most likely via thermal fluctuations of the flanking CC sections. A replacement of the elbow amino acids hinders folding of the consecutive CC region and frequently leads to non-native misalignments, revealing the elbow as a guide for proper folding. Additional in vivo manipulation of the elbow flexibility resulted in impaired cohesin complexes, which directly link the sensitive CC architecture to the biological function of cohesin.

Identifiers

PMID36242515
PMCPMC9748247
OpenAlexW4306167143

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.