Evidence map›Paper›PMID 36240479›Full record

ArticleJournal of clinical oncology : official journal of the American Society of Clinical Oncology2023

Genomic Microsatellite Signatures Identify Germline Mismatch Repair Deficiency and Risk of Cancer Onset.

Jiil Chung, Logine Negm, Vanessa Bianchi, Lucie Stengs, Anirban Das, Zhihui Amy Liu, Sumedha Sudhaman, Melyssa Aronson, Ledia Brunga, Melissa Edwards and 39 more

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
5.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 36 citations in OpenAlex.

  1. Genotype-phenotype correlations inOncology reviews · 2025
    Pooled it
  2. Guideline
  3. "Updates on diagnostic and prognostic molecular biomarkers of CNS tumors".Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Central Nervous System Tumors in Adolescents and Young Adults.Current neurology and neuroscience reports · 2025
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Case of embryonal tumor multilayered rosettes in a patient with neurofibromatosis type 1.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2024
    Article
  15. Article
  16. Article
  17. Efficacy of Nivolumab in Pediatric Cancers with High Mutation Burden and Mismatch Repair Deficiency.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

49 authors at 20 institutions in 6 countries.

Jiil ChungProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0003-4781-7635
Logine NegmProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
Vanessa BianchiThe Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, ON, Canada.
Lucie StengsThe Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, ON, Canada.
Anirban DasProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0001-7653-9529
Zhihui Amy LiuDepartment of Biostatistics, Princess Margaret Cancer Center, University Health Network, Toronto, Ontario, Canada.
Sumedha SudhamanProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
Melyssa AronsonZane Cohen Centre for Digestive Diseases, Mount Sinai Hospital, Toronto, ON, Canada.ORCID 0000-0002-7503-5799
Ledia BrungaProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
Melissa EdwardsProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
Victoria ForsterThe Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0002-9103-8551
Martin KomosaThe Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, ON, Canada.
Scott DavidsonProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0001-5194-4958
Jodi LeesProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
Patrick TombocDepartment of Pediatrics, West Virginia University, Morgantown, WV.ORCID 0000-0002-1255-4719
David SamuelValley Children's Hospital, Madera, CA.
Roula FarahLebanese American University Medical Center-Rizk, Beirut, Lebanon.
Anne BendelDepartment of Pediatric Hematology-Oncology, Children's Minnesota, Minneapolis, MN.
Jeffrey KnipsteinDivision of Pediatric Hematology/Oncology/BMT, Medical College of Wisconsin, Milwaukee, WI.ORCID 0000-0002-0632-2751
Kami Wolfe SchneiderDepartment of Pediatric Hematology-Oncology, Children's Hospital Colorado, Aurora, CO.ORCID 0000-0003-0865-8010
Agnes ReschkeDepartment of Pediatric Hematology/Oncology, Stanford University, Palo Alto, CA.ORCID 0000-0002-0861-1362
Shayna ZelcerDepartment of Pediatrics, London Health Sciences Centre, London, ON, Canada.
Alexandra ZorziDivision of Haematology/Oncology, Western University, London, ON, Canada.
Robert McWilliamsDepartment of Oncology, Mayo Clinic, Rochester, MN.ORCID 0000-0002-8199-5040
William D FoulkesDepartments of Oncology and Human Genetics, McGill University Health Centre, Cancer Genetics Program, Montreal, QC, Canada.ORCID 0000-0001-7427-4651
Raymond BedgoodColiseum Medical Centers, Macon, GA.ORCID 0000-0002-0152-889X
Lindsay PetersonDivision of Medical Oncology, Washington University, St Louis, MO.ORCID 0000-0002-5012-7347
Sara RhodeDepartment of Hematology and Oncology, Cleveland Clinic, Cleveland, OH.
An Van DammePediatric Gastroenterology and Hepatology Unit, Cliniques Universitaires Saint-Luc, Université Catholique de Louvain, Brussels, Belgium.ORCID 0000-0002-7114-201X
Isabelle ScheersUniversite Catholique de Louvain La Faculte de Medecine, Bruxelles, Belgium.
Sharon GardnerDepartment of Pediatric Hematology-Oncology, NYU Langone Health, New York, NY.
Gabriel RobbinsDepartment of Pediatric Hematology-Oncology, NYU Langone Health, New York, NY.ORCID 0000-0002-4447-0667
Magimairajan Issai VananDepartment of Pediatric Hematology-Oncology, CancerCare Manitoba, Winnipeg, MB, Canada.ORCID 0000-0003-2015-0615
M Stephen MeynDivision of Clinical and Metabolic Genetics, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0001-6444-2607
Rebecca AuerCentre for Innovative Cancer Research, Ottawa Hospital Research Institute, Ottawa, ON, Canada.ORCID 0000-0002-3617-0015
Brandie LeachDepartment of Gastroenterology, Hepatology, and Nutrition, Digestive Disease and Surgery Institute, Cleveland Clinic, Cleveland, OH.ORCID 0000-0003-4227-3675
Carol BurkeDepartment of Gastroenterology, Hepatology, and Nutrition, Digestive Disease and Surgery Institute, Cleveland Clinic, Cleveland, OH.
Anita VillaniDivision of Hematology/Oncology, The Hospital for Sick Children, Department of Pediatrics, University of Toronto, Toronto, ON, Canada.ORCID 0000-0003-3283-2197
David MalkinDivision of Hematology/Oncology, The Hospital for Sick Children, Department of Pediatrics, University of Toronto, Toronto, ON, Canada.ORCID 0000-0001-5752-9763
Eric BouffetDivision of Hematology/Oncology, The Hospital for Sick Children, Department of Pediatrics, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-6832-6539
Annie HuangThe Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, ON, Canada.
Michael D TaylorThe Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, ON, Canada.
Carol DurnoZane Cohen Centre for Digestive Diseases, Mount Sinai Hospital, Toronto, ON, Canada.
Adam ShlienProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
Cynthia HawkinsThe Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0003-2618-4402
Gad GetzThe Broad Institute of MIT and Harvard, Cambridge, MA.
Yosef E MaruvkaFaculty of Biotechnology and Food Engineering, The Lokey Center for Life Science and Engineering, TECHNION - Israel Institute of Technology, Haifa, Israel.ORCID 0000-0002-8918-9887
Uri TaboriProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0002-5019-2683
International Replication Repair Deficiency Consortium
Hospital for Sick Children · CAUniversity of Toronto · CACleveland Clinic · USMount Sinai Hospital · CANYU Langone Health · USBroad Institute · USCancerCare Manitoba · CAChildren's Hospital Central California · USChildren's Hospital Colorado · USChildren's Minnesota · USCliniques Universitaires Saint-Luc · BELondon Health Sciences Centre · CAMayo Clinic in Arizona · USMcGill University Health Centre · CAMedical College of Wisconsin · USNavicent Health · USOttawa Hospital · CAStanford University · USTechnion – Israel Institute of Technology · ILUCLouvain · BE

Funding

Towards a preventive cancer vaccine for children with constitutional mismatch repair deficiencyUG1CA189955 · NCI · PUBLIC HEALTH INSTITUTE · PI BRAD H POLLOCK, Michael E. Roth · 2014 to 2026
$62.5M
NCI NIH HHS UG1 CA189955
6 · The paper itself

Abstract

purposeDiagnosis of Mismatch Repair Deficiency (MMRD) is crucial for tumor management and early detection in patients with the cancer predisposition syndrome constitutional mismatch repair deficiency (CMMRD). Current diagnostic tools are cumbersome and inconsistent both in childhood cancers and in determining germline MMRD. PATIENTS AND

methodsWe developed and analyzed a functional Low-pass Genomic Instability Characterization (LOGIC) assay to detect MMRD. The diagnostic performance of LOGIC was compared with that of current established assays including tumor mutational burden, immunohistochemistry, and the microsatellite instability panel. LOGIC was then applied to various normal tissues of patients with CMMRD with comprehensive clinical data including age of cancer presentation.

resultsOverall, LOGIC was 100% sensitive and specific in detecting MMRD in childhood cancers (N = 376). It was more sensitive than the microsatellite instability panel (14%,

conclusionLOGIC was a robust tool for the diagnosis of MMRD in multiple cancer types and in normal tissues. LOGIC may inform therapeutic cancer decisions, provide rapid diagnosis of germline MMRD, and support tailored surveillance for individuals with CMMRD.

Indexed as

Brain NeoplasmsColorectal NeoplasmsNeoplastic Syndromes, HereditaryDNA Mismatch RepairGenomicsGerm CellsHumansMicrosatellite InstabilityMicrosatellite Repeats

Identifiers

PMID36240479
PMCPMC10489375
OpenAlexW4306247953

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.