Evidence map›Paper›PMID 36240212›Full record

ArticlePloS one2022

Machine learning outperformed logistic regression classification even with limit sample size: A model to predict pediatric HIV mortality and clinical progression to AIDS.

Sara Domínguez-Rodríguez, Miquel Serna-Pascual, Andrea Oletto, Shaun Barnabas, Peter Zuidewind, Els Dobbels, Siva Danaviah, Osee Behuhuma, Maria Grazia Lain, Paula Vaz and 13 more

Abstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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  6. Leveraging small-sample machine learning for rigorous prediction of JOA recovery in cervical spondylotic myelopathy patients: insights from imaging parameters and modeling strategies.European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Sara Domínguez-RodríguezPediatric Infectious Diseases Unit, Fundación para la Investigación Biomédica del Hospital 12 de Octubre, Madrid, Spain.ORCID 0000-0003-3747-9265
Miquel Serna-PascualPediatric Infectious Diseases Unit, Fundación para la Investigación Biomédica del Hospital 12 de Octubre, Madrid, Spain.
Andrea OlettoPENTA Foundation, Padova, Italy.ORCID 0000-0001-9089-4770
Shaun BarnabasFamily Centre For Research With Ubuntu (FAMCRU), Stellenbosch University, Cape Town, South Africa.
Peter ZuidewindFamily Centre For Research With Ubuntu (FAMCRU), Stellenbosch University, Cape Town, South Africa.
Els DobbelsFamily Centre For Research With Ubuntu (FAMCRU), Stellenbosch University, Cape Town, South Africa.
Siva DanaviahAfrica Health Research Institute (AHRI), Durban, South Africa.
Osee BehuhumaAfrica Health Research Institute (AHRI), Durban, South Africa.
Maria Grazia LainFundação Ariel Glaser contra o SIDA Pediátrico, Maputo, Mozambique.
Paula VazFundação Ariel Glaser contra o SIDA Pediátrico, Maputo, Mozambique.
Sheila Fernández-LuisCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Tacilta NhampossaBarcelona Institute for Global Health (ISGLOBAL), Barcelona, Spain.
Elisa Lopez-VarelaBarcelona Institute for Global Health (ISGLOBAL), Barcelona, Spain.ORCID 0000-0002-6725-5687
Kennedy OtwombePerinatal HIV Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Afaaf LibertyPerinatal HIV Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Avy ViolariPerinatal HIV Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Almoustapha Issiaka MaigaGabriel Toure University Hospital, Bamako, Mali.
Paolo RossiDivision of Immune and Infectious Diseases, Istituto di Ricovero e Cura a Carattere Scientifico, Ospedale Pediatrico Bambino Gesu, Rome, Italy.
Carlo GiaquintoDepartment of Surgery, Oncology and Gastroenterology, Section of Oncology and Immunology, University of Padova, Padova, Italy.
Louise KuhnGertrude H. Sergievsky Center, Vagelos College of Physititlcians and Surgeons, Columbia University Irving Medical Center, New York, NY, United States of America.
Pablo RojoPediatric Infectious Diseases Unit, Fundación para la Investigación Biomédica del Hospital 12 de Octubre, Madrid, Spain.
Alfredo TagarroPediatric Infectious Diseases Unit, Fundación para la Investigación Biomédica del Hospital 12 de Octubre, Madrid, Spain.ORCID 0000-0003-2860-3455
EPIICAL Consortium

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Logistic regression (LR) is the most common prediction model in medicine. In recent years, supervised machine learning (ML) methods have gained popularity. However, there are many concerns about ML utility for small sample sizes. In this study, we aim to compare the performance of 7 algorithms in the prediction of 1-year mortality and clinical progression to AIDS in a small cohort of infants living with HIV from South Africa and Mozambique. The data set (n = 100) was randomly split into 70% training and 30% validation set. Seven algorithms (LR, Random Forest (RF), Support Vector Machine (SVM), K-Nearest Neighbor (KNN), Naïve Bayes (NB), Artificial Neural Network (ANN), and Elastic Net) were compared. The variables included as predictors were the same across the models including sociodemographic, virologic, immunologic, and maternal status features. For each of the models, a parameter tuning was performed to select the best-performing hyperparameters using 5 times repeated 10-fold cross-validation. A confusion-matrix was built to assess their accuracy, sensitivity, and specificity. RF ranked as the best algorithm in terms of accuracy (82,8%), sensitivity (78%), and AUC (0,73). Regarding specificity and sensitivity, RF showed better performance than the other algorithms in the external validation and the highest AUC. LR showed lower performance compared with RF, SVM, or KNN. The outcome of children living with perinatally acquired HIV can be predicted with considerable accuracy using ML algorithms. Better models would benefit less specialized staff in limited resources countries to improve prompt referral in case of high-risk clinical progression.

Indexed as

Acquired Immunodeficiency SyndromeBayes TheoremChildHumansLogistic ModelsMachine LearningNeural Networks, Computer

Identifiers

PMID36240212
PMCPMC9565414

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.