Evidence map›Paper›PMID 36238894›Full record

ArticleiScience2022

The global Protein-RNA interaction map of ESRP1 defines a post-transcriptional program that is essential for epithelial cell function.

Natoya J Peart, Jae Yeon Hwang, Mathieu Quesnel-Vallières, Matthew J Sears, Yuequin Yang, Peter Stoilov, Yoseph Barash, Juw Won Park, Kristen W Lynch, Russ P Carstens

Open access · goldAbstract read
In one paragraph

Article in iScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 11 citations in OpenAlex.

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  6. Functional analysis ofbioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Natoya J PeartDepartments of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Jae Yeon HwangDepartment of Computer Science and Engineering, University of Louisville, Louisville, KY, USA.
Mathieu Quesnel-VallièresBiochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Matthew J SearsDepartments of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Yuequin YangDepartments of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Peter StoilovDepartment of Biochemistry and Cancer Institute, Robert C. Byrd Health Sciences Center, West Virginia University, Morgantown, WV 26506, USA.
Yoseph BarashGenetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Juw Won ParkDepartment of Computer Science and Engineering, University of Louisville, Louisville, KY, USA.
Kristen W LynchDepartment of Computer Science and Engineering, University of Louisville, Louisville, KY, USA.
Russ P CarstensDepartments of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
University of Pennsylvania · USUniversity of Louisville · USWest Virginia University · US

Funding

UNIVERSITY OF PENNSYLVANIA CAN CTR SUPPORT GRANTP30CA016520 · NCI · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 1985 to 2026
$222.3M
WKU Lead Faculty AwardP20GM103436 · NIGMS · UNIVERSITY OF LOUISVILLE · PI ERIC C ROUCHKA · 2012 to 2026
$60.1M
VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MITCHELL A. LAZAR · 1986 to 2026
$48.3M
TRANSGENIC AND CHIMERIC MOUSE COREP30DK050306 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 1997 to 2026
$32.5M
University of Louisville Center for Integrative Environmental Health SciencesP30ES030283 · NIEHS · UNIVERSITY OF LOUISVILLE · PI J CHRISTOPHER STATES · 2020 to 2026
$10.0M
Signal-Induced Regulation of Alternative RNA ProcessingR35GM118048 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI KRISTEN W LYNCH · 2016 to 2026
$6.6M
Photoreceptor neuron specific alternative splicing of messenger RNAR01EY025536 · NEI · WEST VIRGINIA UNIVERSITY · PI RAMAMURTHY, VISVANATHAN, STOILOV, PETER · 2016 to 2023
$3.3M
Understanding molecular mechanisms underlying the formation of the blue nevus andP30AR057217 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI STANLEY, JOHN R · 2009 to 2013
$3.2M
Esrp regulated programs of alternative splicing in skin development and functionR01AR066741 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI CARSTENS, RUSS PAUL · 2015 to 2019
$1.9M
Esrp regulated programs of alternative splicing in skin development and functionR56AR066741 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI CARSTENS, RUSS PAUL · 2014 to 2014
$370k
NCI NIH HHS P30 CA016520NEI NIH HHS R01 EY025536NIAMS NIH HHS P30 AR057217NIAMS NIH HHS R01 AR066741NIAMS NIH HHS R56 AR066741NIDDK NIH HHS P30 DK019525NIDDK NIH HHS P30 DK050306NIEHS NIH HHS P30 ES030283NIGMS NIH HHS P20 GM103436NIGMS NIH HHS R35 GM118048
6 · The paper itself

Abstract

The epithelial splicing regulatory proteins, ESRP1 and ESRP2, are essential for mammalian development through the regulation of a global program of alternative splicing of genes involved in the maintenance of epithelial cell function. To further inform our understanding of the molecular functions of ESRP1, we performed enhanced crosslinking immunoprecipitation coupled with high-throughput sequencing (eCLIP) in epithelial cells of mouse epidermis. The genome-wide binding sites of ESRP1 were integrated with RNA-Seq analysis of alterations in splicing and total gene expression that result from epidermal ablation of

Indexed as

BiochemistryCell biologyMolecular biology

Identifiers

PMID36238894
PMCPMC9550651
OpenAlexW4297015158

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.