Evidence map›Paper›PMID 36238361›Full record

ArticleFASEB bioAdvances2022

Differential modulation of cancer-related genes by mitochondrial DNA haplogroups and the STING DNA sensing system.

Kevin Schneider, Marilyn Chwa, Shari R Atilano, Sonali Nashine, Nitin Udar, David S Boyer, S Michal Jazwinski, Michael V Miceli, Anthony B Nesburn, Baruch D Kuppermann and 1 more

Open access · goldAbstract read
In one paragraph

Article in FASEB bioAdvances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Kevin SchneiderDepartment of Ophthalmology, Gavin Herbert Eye Institute University of California Irvine Irvine California USA.
Marilyn ChwaDepartment of Ophthalmology, Gavin Herbert Eye Institute University of California Irvine Irvine California USA.
Shari R AtilanoDepartment of Ophthalmology, Gavin Herbert Eye Institute University of California Irvine Irvine California USA.
Sonali NashineDepartment of Ophthalmology, Gavin Herbert Eye Institute University of California Irvine Irvine California USA.
Nitin UdarDepartment of Ophthalmology, Gavin Herbert Eye Institute University of California Irvine Irvine California USA.
David S BoyerRetina-Vitreous Associates Medical Group Beverly Hills California USA.
S Michal JazwinskiTulane Center for Aging and Department of Medicine Tulane University New Orleans Louisiana USA.
Michael V MiceliTulane Center for Aging and Department of Medicine Tulane University New Orleans Louisiana USA.
Anthony B NesburnDepartment of Ophthalmology, Gavin Herbert Eye Institute University of California Irvine Irvine California USA.
Baruch D KuppermannDepartment of Ophthalmology, Gavin Herbert Eye Institute University of California Irvine Irvine California USA.
M Cristina KenneyDepartment of Ophthalmology, Gavin Herbert Eye Institute University of California Irvine Irvine California USA.
University of California, Irvine · USTulane University · USCedars-Sinai Medical Center · USRetina Vitreous Associates Medical Group · US

Funding

University of California Health Participation in the National COVID Cohort Collaborative (N3C)UL1TR001414 · NCATS · UNIVERSITY OF CALIFORNIA-IRVINE · PI COOPER, DAN M, VILAIN, ERIC J. · 2015 to 2023
$35.1M
CELLULAR AGING IN A YEAST MODEL SYSTEMR37AG006168 · NIA · TULANE UNIVERSITY OF LOUISIANA · PI JAZWINSKI, S MICHAL · 1994 to 2016
$5.0M
Protective Effects of Humanin on AMD MitochondriaR01EY027363 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI KENNEY, MARIA C · 2019 to 2021
$1.2M
NCATS NIH HHS UL1 TR001414NEI NIH HHS R01 EY027363NIA NIH HHS R37 AG006168
6 · The paper itself

Abstract

Activation of the Simulator of Interferon Genes (STING) system by mitochondrial (mt) DNA can upregulate type 1 interferon genes and enhance immune responses to combat bacterial and viral infections. In cancers, the tumor-derived DNA activates STING leading to upregulation of IFN-beta and induction of antitumor T cells. The entire mtDNA from the cell lines was sequenced using next-generation sequencing (NGS) technology with independent sequencing of both strands in both directions, allowing identification of low-frequency heteroplasmy SNPs. There were 15 heteroplasmy SNPs showing a range from 3.4% to 40.5% occurrence in the K cybrid cell lines. Three H haplogroup cybrids possessed SNP heteroplasmy that ranged from 4.39% to 30.7%. The present study used qRT-PCR to determine if cybrids of H and K haplogroups differentially regulate expression levels of five cancer genes (

Indexed as

cancer genesmitochondrial DNA haplogroupssimulator of interferon genes (STING)

Identifiers

PMID36238361
PMCPMC9536090
OpenAlexW4292295326

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.