Evidence map›Paper›PMID 36238348›Full record

ArticleCommunications medicine2022

Early SARS-CoV-2 dynamics and immune responses in unvaccinated participants of an intensely sampled longitudinal surveillance study.

Manjula Gunawardana, Simon Webster, Sofia Rivera, John M Cortez, Jessica Breslin, Cristian Pinales, Christopher Buser, F Javier Ibarrondo, Otto O Yang, Michael Bobardt and 5 more

Open access · goldAbstract read
In one paragraph

Article in Communications medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The kinetics of SARS-CoV-2 infection based on a human challenge study.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Manjula GunawardanaDepartment of Chemistry, Oak Crest Institute of Science, 128-132W. Chestnut Ave., Monrovia, CA USA.
Simon Webster *Department of Chemistry, Oak Crest Institute of Science, 128-132W. Chestnut Ave., Monrovia, CA USA.
Sofia Rivera *Department of Chemistry, Oak Crest Institute of Science, 128-132W. Chestnut Ave., Monrovia, CA USA.
John M Cortez *Department of Chemistry, Oak Crest Institute of Science, 128-132W. Chestnut Ave., Monrovia, CA USA.
Jessica Breslin *Department of Chemistry, Oak Crest Institute of Science, 128-132W. Chestnut Ave., Monrovia, CA USA.
Cristian PinalesDepartment of Chemistry, Oak Crest Institute of Science, 128-132W. Chestnut Ave., Monrovia, CA USA.ORCID 0000-0002-0826-5308
Christopher BuserDepartment of Chemistry, Oak Crest Institute of Science, 128-132W. Chestnut Ave., Monrovia, CA USA.ORCID 0000-0002-4379-3878
F Javier IbarrondoUniversity of California, Los Angeles (UCLA), Division of Infectious Diseases, Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA USA.
Otto O YangUniversity of California, Los Angeles (UCLA), Division of Infectious Diseases, Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA USA.ORCID 0000-0003-1970-8992
Michael BobardtDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA USA.
Philippe A GallayDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA USA.
Amy P AdlerJumpstart Research Consulting, LLC, Santa Fe, NM USA.ORCID 0000-0002-1854-6613
Christina M RamirezUniversity of California, Los Angeles (UCLA), Department of Biostatistics, Fielding School of Public Health, UCLA, Los Angeles, CA USA.
Peter A AntonDepartment of Chemistry, Oak Crest Institute of Science, 128-132W. Chestnut Ave., Monrovia, CA USA.
Marc M BaumDepartment of Chemistry, Oak Crest Institute of Science, 128-132W. Chestnut Ave., Monrovia, CA USA.ORCID 0000-0003-1558-5649
Oak Crest Institute of Science · USUniversity of California, Los Angeles · USScripps Research Institute · USSchool for Advanced Research · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: A comprehensive understanding of the SARS-CoV-2 infection dynamics and the ensuing host immune responses is needed to explain the pathogenesis as it relates to viral transmission. Knowledge gaps exist surrounding SARS-CoV-2 in vivo kinetics, particularly in the earliest stages after exposure. Methods: An ongoing, workplace clinical surveillance study was used to intensely sample a small cohort longitudinally. Nine study participants who developed COVID-19 between November, 2020 and March, 2021 were monitored at high temporal resolution for three months in terms of viral loads as well as associated inflammatory biomarker and antibody responses. CD8 + T cells targeting SARS-CoV-2 in blood samples from study participants were evaluated. Results: Here we show that the resulting datasets, supported by Bayesian modeling, allowed the underlying kinetic processes to be described, yielding a number of unexpected findings. Early viral replication is rapid (median doubling time, 3.1 h), providing a narrow window between exposure and viral shedding, while the clearance phase is slow and heterogeneous. Host immune responses different widely across participants. Conclusions: Results from our small study give a rare insight into the life-cycle of COVID-19 infection and hold a number of important biological, clinical, and public health implications.

Indexed as

Medical researchViral infection

Identifiers

PMID36238348
PMCPMC9553075
OpenAlexW4304207109

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.