Evidence map›Paper›PMID 36235424›Full record

ArticlePlants (Basel, Switzerland)2022

Identification of microRNAs That Provide a Low Light Stress Tolerance-Mediated Signaling Pathway during Vegetative Growth in Rice.

Sudhanshu Sekhar, Swagatika Das, Darshan Panda, Soumya Mohanty, Baneeta Mishra, Awadhesh Kumar, Devanna Basavantraya Navadagi, Rameswar Prasad Sah, Sharat Kumar Pradhan, Sanghamitra Samantaray and 3 more

Open access · goldAbstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Sudhanshu SekharCrop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack 753006, India.ORCID 0000-0003-2045-4520
Swagatika DasCrop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack 753006, India.
Darshan PandaCrop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack 753006, India.ORCID 0000-0003-4479-9320
Soumya MohantyCrop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack 753006, India.
Baneeta MishraCrop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack 753006, India.
Awadhesh KumarCrop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack 753006, India.ORCID 0000-0002-4428-1030
Devanna Basavantraya NavadagiCrop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack 753006, India.ORCID 0000-0002-7404-6111
Rameswar Prasad SahCrop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack 753006, India.ORCID 0000-0003-1724-3685
Sharat Kumar PradhanCrop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack 753006, India.ORCID 0000-0001-7716-0721
Sanghamitra SamantarayCrop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack 753006, India.ORCID 0000-0002-5440-6378
Mirza Jaynul BaigCrop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack 753006, India.
Lambodar BeheraCrop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack 753006, India.
Trilochan MohapatraFormer Secretary DARE, DG, ICAR, Government. of India, New Delhi 11001, India.
Central Rice Research Institute · INGovernment of India · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Low light intensity affects several physiological parameters during the different growth stages in rice. Plants have various regulatory mechanisms to cope with stresses. One of them is the differential and temporal expression of genes, which is governed by post-transcriptional gene expression regulation through endogenous miRNAs. To decipher low light stress-responsive miRNAs in rice, miRNA expression profiling was carried out using next-generation sequencing of low-light-tolerant (Swarnaprabha) and -sensitive (IR8) rice genotypes through Illumina sequencing. Swarnaprabha and IR8 were subjected to 25% low light treatment for one day, three days, and five days at the active tillering stage. More than 43 million raw reads and 9 million clean reads were identified in Swarnaprabha, while more than 41 million raw reads and 8.5 million clean reads were identified in IR8 after NGS. Importantly, 513 new miRNAs in rice were identified, whose targets were mostly regulated by the genes involved in photosynthesis and metabolic pathways. Additionally, 114 known miRNAs were also identified. Five novel (

Indexed as

chlorophyllindex: low lightIR8miRNAriceSwarnaprabhavegetative stage

Identifiers

PMID36235424
PMCPMC9614602
OpenAlexW4297524393

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.