Evidence map›Paper›PMID 36231043›Full record

ArticleCells2022

Morphology of Phagophore Precursors by Correlative Light-Electron Microscopy.

Sigurdur Runar Gudmundsson, Katri A Kallio, Helena Vihinen, Eija Jokitalo, Nicholas Ktistakis, Eeva-Liisa Eskelinen

Open access · goldAbstract read
In one paragraph

Article in Cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Where and how do mammalian cells shape autophagosomes?The Journal of biological chemistry · 2026
    Review
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  5. Article
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  13. Article
  14. Mitophagy in ototoxicity.Frontiers in cellular neuroscience · 2023
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Sigurdur Runar GudmundssonMolecular and Integrative Biosciences, University of Helsinki, 00790 Helsinki, Finland.
Katri A KallioMolecular and Integrative Biosciences, University of Helsinki, 00790 Helsinki, Finland.
Helena VihinenInstitute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland.ORCID 0000-0003-3862-9237
Eija JokitaloInstitute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland.ORCID 0000-0002-4159-6934
Nicholas KtistakisBabraham Institute, Cambridge CB22 3AT, UK.
Eeva-Liisa EskelinenInstitute of Biomedicine, University of Turku, 20520 Turku, Finland.ORCID 0000-0003-0006-7785
University of Helsinki · FIBabraham Institute · GBUniversity of Turku · FI

Funding

Biotechnology and Biological Sciences Research Council BBS/E/B/000C0413
6 · The paper itself

Abstract

Autophagosome biogenesis occurs in the transient subdomains of the endoplasmic reticulum that are called omegasomes, which, in fluorescence microscopy, appear as small puncta, which then grow in diameter and finally shrink and disappear once the autophagosome is complete. Autophagosomes are formed by phagophores, which are membrane cisterns that elongate and close to form the double membrane that limits autophagosomes. Earlier electron-microscopy studies showed that, during elongation, phagophores are lined by the endoplasmic reticulum on both sides. However, the morphology of the very early phagophore precursors has not been studied at the electron-microscopy level. We used live-cell imaging of cells expressing markers of phagophore biogenesis combined with correlative light-electron microscopy, as well as electron tomography of ATG2A/B-double-deficient cells, to reveal the high-resolution morphology of phagophore precursors in three dimensions. We showed that phagophores are closed or nearly closed into autophagosomes already at the stage when the omegasome diameter is still large. We further observed that phagophore precursors emerge next to the endoplasmic reticulum as bud-like highly curved membrane cisterns with a small opening to the cytosol. The phagophore precursors then open to form more flat cisterns that elongate and curve to form the classically described crescent-shaped phagophores.

Indexed as

AutophagosomesElectronsAutophagyEndoplasmic ReticulumMicroscopy, ElectronATG13ATG2autophagycorrelative light-electron microscopyDFCP1isolation membraneomegasomephagophore

Identifiers

PMID36231043
PMCPMC9562894
OpenAlexW4303628253

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.