Evidence map›Paper›PMID 36230893›Full record

ArticleCells2022

Hmo1 Protein Affects the Nucleosome Structure and Supports the Nucleosome Reorganization Activity of Yeast FACT.

Daria K Malinina, Anastasiia L Sivkina, Anna N Korovina, Laura L McCullough, Tim Formosa, Mikhail P Kirpichnikov, Vasily M Studitsky, Alexey V Feofanov

Open access · goldAbstract read
In one paragraph

Article in Cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Daria K MalininaBiology Faculty, Lomonosov Moscow State University, 119992 Moscow, Russia.
Anastasiia L SivkinaBiology Faculty, Lomonosov Moscow State University, 119992 Moscow, Russia.
Anna N KorovinaBiology Faculty, Lomonosov Moscow State University, 119992 Moscow, Russia.
Laura L McCulloughDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT 84132, USA.ORCID 0000-0002-2206-6479
Tim FormosaDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT 84132, USA.ORCID 0000-0002-8477-2483
Mikhail P KirpichnikovBiology Faculty, Lomonosov Moscow State University, 119992 Moscow, Russia.
Vasily M StuditskyBiology Faculty, Lomonosov Moscow State University, 119992 Moscow, Russia.ORCID 0000-0002-7389-7993
Alexey V FeofanovBiology Faculty, Lomonosov Moscow State University, 119992 Moscow, Russia.ORCID 0000-0002-1596-9506
Lomonosov Moscow State University · RUUniversity of Utah · USFox Chase Cancer Center · US

Funding

Biochemical, Genetic, and Genomic Analysis of Nucleosome Reorganization by FACTR01GM064649 · NIGMS · UNIVERSITY OF UTAH · PI FORMOSA, TIMOTHY G · 2002 to 2022
$6.4M
NIGMS NIH HHS R01 GM064649
6 · The paper itself

Abstract

Yeast Hmo1 is a high mobility group B (HMGB) protein that participates in the transcription of ribosomal protein genes and rDNA, and also stimulates the activities of some ATP-dependent remodelers. Hmo1 binds both DNA and nucleosomes and has been proposed to be a functional yeast analog of mammalian linker histones. We used EMSA and single particle Förster resonance energy transfer (spFRET) microscopy to characterize the effects of Hmo1 on nucleosomes alone and with the histone chaperone FACT. Hmo1 induced a significant increase in the distance between the DNA gyres across the nucleosomal core, and also caused the separation of linker segments. This was opposite to the effect of the linker histone H1, which enhanced the proximity of linkers. Similar to Nhp6, another HMGB factor, Hmo1, was able to support large-scale, ATP-independent, reversible unfolding of nucleosomes by FACT in the spFRET assay and partially support FACT function in vivo. However, unlike Hmo1, Nhp6 alone does not affect nucleosome structure. These results suggest physiological roles for Hmo1 that are distinct from Nhp6 and possibly from other HMGB factors and linker histones, such as H1.

Indexed as

NucleosomesSaccharomyces cerevisiae ProteinsAdenosine TriphosphateAnimalsDNA-Binding ProteinsDNA, RibosomalHigh Mobility Group ProteinsHistone ChaperonesHistonesHMGB ProteinsMammalsRibosomal ProteinsSaccharomyces cerevisiaeTranscriptional Elongation FactorsAdenosine TriphosphateDNA-Binding ProteinsDNA, RibosomalFACT protein, S cerevisiaeHigh Mobility Group ProteinsHistone ChaperonesHistonesHMGB ProteinsHMO1 protein, S cerevisiaeNucleosomesRibosomal ProteinsSaccharomyces cerevisiae ProteinsTranscriptional Elongation FactorsEMSAFACTH1 histonehigh mobility group B proteinHmo1nucleosomespFRET

Identifiers

PMID36230893
PMCPMC9564320
OpenAlexW4296466617

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.