Evidence map›Paper›PMID 36230517›Full record

ArticleCancers2022

TBX21 Methylation as a Potential Regulator of Immune Suppression in CMS1 Subtype Colorectal Cancer.

Yuanyuan Shen, Yulia I Nussbaum, Yariswamy Manjunath, Justin J Hummel, Matthew A Ciorba, Wesley C Warren, Jussuf T Kaifi, Christos Papageorgiou, Rene Cortese, Chi-Ren Shyu and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 3 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Yuanyuan ShenInstitute for Data Science & Informatics, University of Missouri, Columbia, MO 65211, USA.
Yulia I NussbaumInstitute for Data Science & Informatics, University of Missouri, Columbia, MO 65211, USA.ORCID 0000-0001-8707-3007
Yariswamy ManjunathHarry S. Truman Memorial Veterans' Hospital, University of Missouri, Columbia, MO 65211, USA.
Justin J HummelInstitute for Data Science & Informatics, University of Missouri, Columbia, MO 65211, USA.
Matthew A CiorbaSchool of Medicine, Washington University in St. Louis, St. Louis, MO 63130, USA.ORCID 0000-0002-7656-0982
Wesley C WarrenInstitute for Data Science & Informatics, University of Missouri, Columbia, MO 65211, USA.
Jussuf T KaifiInstitute for Data Science & Informatics, University of Missouri, Columbia, MO 65211, USA.ORCID 0000-0003-3425-2356
Christos PapageorgiouSchool of Medicine, University of Missouri, Columbia, MO 65211, USA.
Rene CorteseSchool of Medicine, University of Missouri, Columbia, MO 65211, USA.ORCID 0000-0001-9262-7828
Chi-Ren ShyuInstitute for Data Science & Informatics, University of Missouri, Columbia, MO 65211, USA.ORCID 0000-0001-9197-9522
Jonathan B MitchemInstitute for Data Science & Informatics, University of Missouri, Columbia, MO 65211, USA.ORCID 0000-0002-5385-7038
University of Missouri · USHarry S. Truman Memorial Veterans' Hospital · USWashington University in St. Louis · US

Funding

TARGETING TRYPTOPHAN METABOLISM IN COLITIS ASSOCIATED CANCERR01DK109384 · NIDDK · WASHINGTON UNIVERSITY · PI CIORBA, MATTHEW AARON · 2016 to 2020
$1.7M
BLRD VA IK2 BX004346BLRD VA K2BX004346-01A1NIDDK NIH HHS R01 DK109384NIH HHS R01 DK109384Siteman Cancer Center/Ellis Fischel Cancer Center Foundations N/A
6 · The paper itself

Abstract

Cytotoxic T lymphocyte (CTL) infiltration is associated with survival, recurrence, and therapeutic response in colorectal cancer (CRC). Immune checkpoint inhibitor (ICI) therapy, which requires CTLs for response, does not work for most CRC patients. Therefore, it is critical to improve our understanding of immune resistance in this disease. We utilized 2391 CRC patients and 7 omics datasets, integrating clinical and genomic data to determine how DNA methylation may impact survival and CTL function in CRC. Using comprehensive molecular subtype (CMS) 1 patients as reference, we found TBX21 to be the only gene with altered expression and methylation that was associated with CTL infiltration. We found that CMS1 patients with high TBX21 expression and low methylation had a significant survival advantage. To confirm the role of Tbx21 in CTL function, we utilized scRNAseq data, demonstrating the association of TBX21 with markers of enhanced CTL function. Further analysis using pathway enrichment found that the genes TBX21, MX1, and SP140 had altered expression and methylation, suggesting that the TP53/P53 pathway may modify TBX21 methylation to upregulate TBX21 expression. Together, this suggests that targeting epigenetic modification more specifically for therapy and patient stratification may provide improved outcomes in CRC.

Indexed as

CD8+ TEXcolorectal cancerconsensus molecular subtypesepigeneticscRNAseqTBX21TCGA

Identifiers

PMID36230517
PMCPMC9558549
OpenAlexW4296992774

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.