Evidence map›Paper›PMID 36229431›Full record

ArticleNature communications2022

INTS13 variants causing a recessive developmental ciliopathy disrupt assembly of the Integrator complex.

Lauren G Mascibroda, Mohammad Shboul, Nathan D Elrod, Laurence Colleaux, Hanan Hamamy, Kai-Lieh Huang, Natoya Peart, Moirangthem Kiran Singh, Hane Lee, Barry Merriman and 17 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 33 citations in OpenAlex.

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  13. Neuronal differentiation requires BRAT1 complex to remove REST from chromatin.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 13 institutions in 7 countries.

Lauren G Mascibroda *Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, 77550, USA.ORCID 0000-0002-1200-8849
Mohammad Shboul *Department of Medical Laboratory Sciences, Jordan University of Science and Technology, Irbid, Jordan.ORCID 0000-0003-3286-1422
Nathan D ElrodDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, 77550, USA.ORCID 0000-0003-1310-6026
Laurence ColleauxInserm UMR 1163, Institut Imagine, 24 Boulevard du Montparnasse, 75015, Paris, France.
Hanan HamamyDepartment of Genetic Medicine and Development, University Hospital, Geneva, Switzerland.
Kai-Lieh HuangDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, 77550, USA.ORCID 0000-0001-5407-648X
Natoya PeartDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, 77550, USA.ORCID 0000-0001-7264-062X
Moirangthem Kiran SinghDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, 77550, USA.ORCID 0000-0001-9620-5454
Hane LeeDepartment of Pathology and Laboratory Medicine, Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, 90095, USA.
Barry MerrimanDepartment of Pathology and Laboratory Medicine, Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, 90095, USA.
Jeanne N JodoinDepartment of Cell and Developmental Biology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Poojitha SitaramDepartment of Cell and Developmental Biology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.ORCID 0000-0003-3285-5057
Laura A LeeDepartment of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Raja FathallaNational Center for Diabetes, Endocrinology and Genetics, Amman, Jordan.
Baeth Al-RawashdehFaculty of Medicine, Hospital of the University of Jordan, University of Jordan, Amman, Jordan.ORCID 0000-0003-2648-0180
Osama AbabnehFaculty of Medicine, Hospital of the University of Jordan, University of Jordan, Amman, Jordan.
Mohammad El-KhateebNational Center for Diabetes, Endocrinology and Genetics, Amman, Jordan.
Nathalie Escande-BeillardDepartment of Medical Genetics, KOÇ University, Istanbul, Turkey.ORCID 0000-0002-7706-1608
Stanley F NelsonDepartment of Pathology and Laboratory Medicine, Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, 90095, USA.
Yixuan WuDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA.
Liang TongDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA.ORCID 0000-0002-0563-6468
Linda J KenneyDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, 77550, USA.ORCID 0000-0002-8658-0717
Sudipto RoyInstitute of Molecular and Cell Biology, A*STAR, Singapore, Singapore.
William K RussellDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, 77550, USA.ORCID 0000-0003-1931-4555
Jeanne AmielService de Génétique, Institut Imagine, 24 Boulevard du Montparnasse, 75015, Paris, France.
Bruno ReversadeDepartment of Medical Genetics, KOÇ University, Istanbul, Turkey. bruno@reversade.com.ORCID 0000-0002-4070-7997
Eric J WagnerDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX, 77550, USA. Eric_Wagner@URMC.Rochester.edu.ORCID 0000-0003-0217-383X
The University of Texas Medical Branch at Galveston · USUniversity of California, Los Angeles · USVanderbilt University Medical Center · USAgency for Science, Technology and Research · SGColumbia University · USUniversity of Jordan · JOInserm · FRInstitut des Maladies Génétiques Imagine · FRJordan University of Science and Technology · JOKoç University · TRUniversity Hospital of Geneva · CHUniversity of Rochester · USUniversity of Rochester Medical Center · US

Funding

Structural and functional studies of mRNA processing, stability and quality controlR35GM118093 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI LIANG TONG · 2016 to 2026
$8.5M
Probing the specificity and activity of the metazoan Integrator complexR01GM134539 · NIGMS · HARVARD MEDICAL SCHOOL · PI Karen L Adelman, ERIC J WAGNER · 2019 to 2026
$4.7M
NIGMS NIH HHS R01 GM134539NIGMS NIH HHS R35 GM118093
6 · The paper itself

Abstract

Oral-facial-digital (OFD) syndromes are a heterogeneous group of congenital disorders characterized by malformations of the face and oral cavity, and digit anomalies. Mutations within 12 cilia-related genes have been identified that cause several types of OFD, suggesting that OFDs constitute a subgroup of developmental ciliopathies. Through homozygosity mapping and exome sequencing of two families with variable OFD type 2, we identified distinct germline variants in INTS13, a subunit of the Integrator complex. This multiprotein complex associates with RNA Polymerase II and cleaves nascent RNA to modulate gene expression. We determined that INTS13 utilizes its C-terminus to bind the Integrator cleavage module, which is disrupted by the identified germline variants p.S652L and p.K668Nfs*9. Depletion of INTS13 disrupts ciliogenesis in human cultured cells and causes dysregulation of a broad collection of ciliary genes. Accordingly, its knockdown in Xenopus embryos leads to motile cilia anomalies. Altogether, we show that mutations in INTS13 cause an autosomal recessive ciliopathy, which reveals key interactions between components of the Integrator complex.

Indexed as

CiliopathiesOrofaciodigital SyndromesCarrier ProteinsCell Cycle ProteinsCiliaHomozygoteHumansMutationRNARNA Polymerase IICarrier ProteinsCell Cycle ProteinsINTS13 protein, humanRNARNA Polymerase II

Identifiers

PMID36229431
PMCPMC9559116
OpenAlexW4304976067

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.