Evidence map›Paper›PMID 36228522›Full record

ArticleBioorganic & medicinal chemistry2022

Structure activity relationship of pyrazinoic acid analogs as potential antimycobacterial agents.

Pooja V Hegde, Wassihun W Aragaw, Malcolm S Cole, Gorakhnath Jachak, Priya Ragunathan, Sachin Sharma, Amaravadhi Harikishore, Gerhard Grüber, Thomas Dick, Courtney C Aldrich

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. TargetingACS omega · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Pooja V HegdeDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, MN, USA.
Wassihun W AragawCenter for Discovery and Innovation, Hackensack Meridian Health, Nutley, NJ, USA.
Malcolm S ColeDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, MN, USA.
Gorakhnath JachakDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, MN, USA.
Priya RagunathanSchool of Biological Sciences, Nanyang Technological University, Singapore, Republic of Singapore.
Sachin SharmaDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, MN, USA.
Amaravadhi HarikishoreSchool of Biological Sciences, Nanyang Technological University, Singapore, Republic of Singapore.
Gerhard GrüberSchool of Biological Sciences, Nanyang Technological University, Singapore, Republic of Singapore. Electronic address: ggrueber@ntu.edu.sg.
Thomas DickCenter for Discovery and Innovation, Hackensack Meridian Health, Nutley, NJ, USA; Departmentof Medical Sciences, Hackensack Meridian School of Medicine, Nutley, NJ, USA; Department of Microbiology and Immunology, Georgetown University, Washington, DC, USA. Electronic address: thomas.dick.cdi@gmail.com.
Courtney C AldrichDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, MN, USA. Electronic address: aldri015@umn.edu.
University of Minnesota · USNanyang Technological University · SGCenter for Discovery · USGeorgetown University · US

Funding

Target based discovery of next generation pyrazinamideR01AI106398 · NIAID · RBHS-NEW JERSEY MEDICAL SCHOOL · PI DICK, THOMAS · 2013 to 2022
$7.1M
NIAID NIH HHS R01 AI106398
6 · The paper itself

Abstract

Tuberculosis (TB) remains a leading cause of infectious disease-related mortality and morbidity. Pyrazinamide (PZA) is a critical component of the first-line TB treatment regimen because of its sterilizing activity against non-replicating Mycobacterium tuberculosis (Mtb), but its mechanism of action has remained enigmatic. PZA is a prodrug converted by pyrazinamidase encoded by pncA within Mtb to the active moiety, pyrazinoic acid (POA) and PZA resistance is caused by loss-of-function mutations to pyrazinamidase. We have recently shown that POA induces targeted protein degradation of the enzyme PanD, a crucial component of the coenzyme A biosynthetic pathway essential in Mtb. Based on the newly identified mechanism of action of POA, along with the crystal structure of PanD bound to POA, we designed several POA analogs using structure for interpretation to improve potency and overcome PZA resistance. We prepared and tested ring and carboxylic acid bioisosteres as well as 3, 5, 6 substitutions on the ring to study the structure activity relationships of the POA scaffold. All the analogs were evaluated for their whole cell antimycobacterial activity, and a few representative molecules were evaluated for their binding affinity, towards PanD, through isothermal titration calorimetry. We report that analogs with ring and carboxylic acid bioisosteres did not significantly enhance the antimicrobial activity, whereas the alkylamino-group substitutions at the 3 and 5 position of POA were found to be up to 5 to 10-fold more potent than POA. Further development and mechanistic analysis of these analogs may lead to a next generation POA analog for treating TB.

Indexed as

Mycobacterium tuberculosisTuberculosisAmidohydrolasesAntitubercular AgentsCarboxylic AcidsDrug Resistance, BacterialHumansMicrobial Sensitivity TestsMutationPyrazinamideStructure-Activity RelationshipAmidohydrolasesAntitubercular AgentsCarboxylic AcidsPyrazinamidepyrazinoic acidpyrazinamidePyrazinoic acidTuberculosis

Identifiers

PMID36228522
PMCPMC10551889
OpenAlexW4303183197

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.