Evidence map›Paper›PMID 36228247›Full record

ArticleRevista da Associacao Medica Brasileira (1992)2022

Quantification of cell-free circulating mitochondrial DNA copy number variation in hepatocellular carcinoma.

Burhanettin Yalçınkaya, Didem Tastekin, Fatih Güzelbulut, Muslum Akgoz, Sadrettin Pençe

Open access · diamondAbstract read
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Article in Revista da Associacao Medica Brasileira (1992), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Burhanettin YalçınkayaTUBITAK National Metrology Institute - Kocaeli, Turkey.ORCID http://orcid.org/0000-0002-3744-6634
Didem TastekinIstanbul University, Institute of Oncology - Istanbul, Turkey.ORCID http://orcid.org/0000-0002-9522-9849
Fatih GüzelbulutUniversity of Health Sciences, Haydarpaşa Numune Training and Research Hospital - Istanbul, Turkey.ORCID http://orcid.org/0000-0003-4889-208X
Muslum AkgozTUBITAK National Metrology Institute - Kocaeli, Turkey.ORCID http://orcid.org/0000-0001-5065-8087
Sadrettin PençeIstanbul Medeniyet University, Faculty of Medicine - Istanbul, Turkey.ORCID http://orcid.org/0000-0001-9453-4166
Tübitak National Metrology Institute · TRIstanbul Medeniyet University · TRIstanbul University · TRIzmir University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveHepatocellular carcinoma is the most common primary malignant liver tumor. Mitochondrial DNA copy number has been shown to be associated with various malignancies. However, there has not been any study on the absolute quantification of mtDNA copy number in hepatocellular carcinoma. The aim of this study was to develop a new method for absolute quantification of mtDNA copy number and to relatively quantify the variations in the mtDNA copy number in hepatocellular carcinoma patients in comparison with healthy individuals.

methodsVenous blood samples were collected from both hepatocellular carcinoma patients (34) and healthy individuals (34). Circulating cell-free DNAs were isolated and the relative quantification of mtDNA copy number variation was determined using quantitative polymerase chain reaction and digital polymerase chain reaction.

resultsIt was found that the relative mtDNA copy number was significantly decreased in hepatocellular carcinoma patients in comparison with the control group (p<0.05). The median (range) and average of relative mtDNA/β-actin gene of the patients were determined as 42.8 cp/μL (11.1-88.5) and 45.1 cp/μL, respectively, while the median (range) and average relative mtDNA/β-actin gene of the control group were determined as 102.8 cp/μL (55.1-291.8) and 138.7 cp/μL, respectively (p<0.05). When quantitative polymerase chain reaction and digital polymerase chain reaction were compared, mtDNA/β-actin gene copy number ratio of digital polymerase chain reaction results was found to be 1.76-fold more than that of quantitative polymerase chain reaction results.

conclusionCirculating mtDNA copy number was decreased in hepatocellular carcinoma patients in comparison with healthy individuals, and we suggest that it can be used as a noninvasive biomarker for hepatocellular carcinoma diagnosis in the future.

Indexed as

Carcinoma, HepatocellularLiver NeoplasmsActinsDNA Copy Number VariationsDNA, MitochondrialHumansActinsDNA, Mitochondrial

Identifiers

PMID36228247
PMCPMC9575012
OpenAlexW4303438007

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.