Evidence map›Paper›PMID 36227340›Full record

ArticleApplied microbiology and biotechnology2022

Contribution of dicarboxylic acids to pyrene biodegradation and transcriptomic responses of Enterobacter sp. PRd5.

Chaoba Lin, Fuying Zhang, Lulu Sun, Zengxing Zhou, Rui Chen, Xuezhu Zhu

Abstract read
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In one paragraph

Article in Applied microbiology and biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Chaoba LinCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Fuying ZhangCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Lulu SunCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Zengxing ZhouCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Rui ChenCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Xuezhu ZhuCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China. zhuxuezhu@njau.edu.cn.ORCID http://orcid.org/0000-0002-7845-8367
Nanjing Agricultural University · CN

Funding

National Key R & D Plan Key Project 2019YFC1804301National Natural Science Foundation of China 31870489
6 · The paper itself

Abstract

The colonization of degrading endophytic bacteria is an effective means to reduce the residues of polycyclic aromatic hydrocarbons (PAHs) in crops. Dicarboxylic acids, as the main active components in crops, can affect the physiological activities of endophytic bacteria and alter the biodegradation process of PAHs in crops. In this study, malonic acid and succinic acid were selected as the representatives to investigate the contribution of dicarboxylic acids to pyrene biodegradation by endophytic Enterobacter sp. PRd5 in vitro. The results showed that dicarboxylic acids improved the biodegradation of pyrene and altered the expression of the functional gene of strain PRd5. Malonic acid and succinic acid reduced the half-life of pyrene by 20.0% and 27.8%, respectively. The degrading enzyme activities were significantly stimulated by dicarboxylic acids. There were 386 genes up-regulated and 430 genes down-regulated in strain PRd5 with malonic acid, while 293 genes up-regulated and 340 genes down-regulated with succinic acid. Those up-regulated genes were distributed in the functional classification of signal transduction, membrane transport, energy metabolism, carbohydrate metabolism, and amino acid metabolism. Malonic acid mainly enhanced the central carbon metabolism, cell proliferation, and cell activity. Succinic acid mainly improved the expression of degrading gene. Overall, the findings of this study provide new insights into the regulation and control of PAH stress by crops. KEY POINTS: • Dicarboxylic acids improved the biodegradation of pyrene by Enterobacter sp. PRd5. • The degrading enzyme activities were stimulated by dicarboxylic acids. • There are different facilitation mechanisms between malonic acid and succinic acid.

Indexed as

Dicarboxylic AcidsPolycyclic Aromatic HydrocarbonsBiodegradation, EnvironmentalEnterobacterMalonatesPyrenesSuccinatesTranscriptomeDicarboxylic AcidsMalonatesmalonic acidPolycyclic Aromatic HydrocarbonspyrenePyrenesSuccinatesEnterobacter sp. PRd5Malonic acidPyrene biodegradationSuccinic acidTranscriptomic

Identifiers

PMID36227340
OpenAlexW4304893140

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.