Evidence map›Paper›PMID 36225098›Full record

ArticleBiotechnology and bioengineering2023

A reinforcement learning-based hybrid modeling framework for bioprocess kinetics identification.

Max R Mowbray, Chufan Wu, Alexander W Rogers, Ehecatl A Del Rio-Chanona, Dongda Zhang

Abstract read
In one paragraph

Article in Biotechnology and bioengineering, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

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7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Max R MowbrayDepartment of Chemical Engineering, Centre for Process Integration, University of Manchester, Manchester, UK.
Chufan WuDepartment of Chemical Engineering, Centre for Process Integration, University of Manchester, Manchester, UK.
Alexander W RogersDepartment of Chemical Engineering, Centre for Process Integration, University of Manchester, Manchester, UK.
Ehecatl A Del Rio-ChanonaCentre for Process Systems Engineering, Imperial College London, London, UK.
Dongda ZhangDepartment of Chemical Engineering, Centre for Process Integration, University of Manchester, Manchester, UK.ORCID 0000-0001-5956-4618

Funding

Engineering and Physical Sciences Research Council (EPSRC), UK EP/T031123/1
6 · The paper itself

Abstract

Constructing predictive models to simulate complex bioprocess dynamics, particularly time-varying (i.e., parameters varying over time) and history-dependent (i.e., current kinetics dependent on historical culture conditions) behavior, has been a longstanding research challenge. Current advances in hybrid modeling offer a solution to this by integrating kinetic models with data-driven techniques. This article proposes a novel two-step framework: first (i) speculate and combine several possible kinetic model structures sourced from process and phenomenological knowledge, then (ii) identify the most likely kinetic model structure and its parameter values using model-free Reinforcement Learning (RL). Specifically, Step 1 collates feasible history-dependent model structures, then Step 2 uses RL to simultaneously identify the correct model structure and the time-varying parameter trajectories. To demonstrate the performance of this framework, a range of in-silico case studies were carried out. The results show that the proposed framework can efficiently construct high-fidelity models to quantify both time-varying and history-dependent kinetic behaviors while minimizing the risks of over-parametrization and over-fitting. Finally, the primary advantages of the proposed framework and its limitation were thoroughly discussed in comparison to other existing hybrid modeling and model structure identification techniques, highlighting the potential of this framework for general bioprocess modeling.

Indexed as

Kineticshistorical-dependent kineticshybrid modelingmodel structure identificationreinforcement learningtime-varying parameter estimation

Identifiers

PMID36225098
PMCPMC10092184

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.