Evidence map›Paper›PMID 36224268›Full record

ArticleThe ISME journal2023

Distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution.

Isabel Rathmann, Mona Förster, Melih Yüksel, Lucas Horst, Gabriela Petrungaro, Tobias Bollenbach, Berenike Maier

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in The ISME journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Isabel Rathmann *Institute for Biological Physics, University of Cologne, Zülpicherstr. 47a, 50674, Köln, Germany.
Mona Förster *Institute for Biological Physics, University of Cologne, Zülpicherstr. 47a, 50674, Köln, Germany.ORCID http://orcid.org/0000-0003-0662-6357
Melih YükselInstitute for Biological Physics, University of Cologne, Zülpicherstr. 47a, 50674, Köln, Germany.
Lucas HorstInstitute for Biological Physics, University of Cologne, Zülpicherstr. 47a, 50674, Köln, Germany.
Gabriela PetrungaroInstitute for Biological Physics, University of Cologne, Zülpicherstr. 47a, 50674, Köln, Germany.
Tobias BollenbachInstitute for Biological Physics, University of Cologne, Zülpicherstr. 47a, 50674, Köln, Germany.ORCID http://orcid.org/0000-0003-4398-476X
Berenike MaierInstitute for Biological Physics, University of Cologne, Zülpicherstr. 47a, 50674, Köln, Germany. berenike.maier@uni-koeln.de.ORCID http://orcid.org/0000-0001-6971-9927
University of Cologne · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial transformation, a common mechanism of horizontal gene transfer, can speed up adaptive evolution. How its costs and benefits depend on the growth environment is poorly understood. Here, we characterize the distributions of fitness effects (DFE) of transformation in different conditions and test whether they predict in which condition transformation is beneficial. To determine the DFEs, we generate hybrid libraries between the recipient Bacillus subtilis and different donor species and measure the selection coefficient of each hybrid strain. In complex medium, the donor Bacillus vallismortis confers larger fitness effects than the more closely related donor Bacillus spizizenii. For both donors, the DFEs show strong effect beneficial transfers, indicating potential for fast adaptive evolution. While some transfers of B. vallismortis DNA show pleiotropic effects, various transfers are beneficial only under a single growth condition, indicating that the recipient can benefit from a variety of donor genes to adapt to varying growth conditions. We scrutinize the predictive value of the DFEs by laboratory evolution under different growth conditions and show that the DFEs correctly predict the condition at which transformation confers a benefit. We conclude that transformation has a strong potential for speeding up adaptation to varying environments by profiting from a gene pool shared between closely related species.

Indexed as

Bacillus subtilisGene Transfer, HorizontalAdaptation, Physiological

Identifiers

PMID36224268
PMCPMC9751276
OpenAlexW4304808071

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.