Evidence map›Paper›PMID 36223742›Full record

ArticleCell reports2022

Alternative somatic and germline gene-regulatory strategies during starvation-induced developmental arrest.

Amy K Webster, Rojin Chitrakar, Seth M Taylor, L Ryan Baugh

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. An atlas of thebioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Amy K WebsterDepartment of Biology, Duke University, Durham, NC 27708, USA.
Rojin ChitrakarDepartment of Biology, Duke University, Durham, NC 27708, USA.
Seth M TaylorDepartment of Biology, Duke University, Durham, NC 27708, USA.
L Ryan BaughDepartment of Biology, Duke University, Durham, NC 27708, USA; Center for Genomic and Computational Biology, Duke University, Durham, NC 27708, USA. Electronic address: ryan.baugh@duke.edu.
Duke University · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Genetics and Genomics Training GrantT32GM136627 · NIGMS · DUKE UNIVERSITY · PI ALLISON E ASHLEY-KOCH · 2020 to 2026
$3.1M
Systemic, maternal and transgenerational effects of nutrient stressR01GM117408 · NIGMS · DUKE UNIVERSITY · PI BAUGH, LARRY RYAN · 2015 to 2022
$2.5M
Genetic and Genomic Analysis of Starvation Resistance in C. elegansR01GM143159 · NIGMS · DUKE UNIVERSITY · PI BAUGH, LARRY RYAN · 2021 to 2024
$1.2M
NIGMS NIH HHS R01 GM117408NIGMS NIH HHS R01 GM143159NIGMS NIH HHS T32 GM136627NIH HHS P40 OD010440
6 · The paper itself

Abstract

Nutrient availability governs growth and quiescence, and many animals arrest development when starved. Using C. elegans L1 arrest as a model, we show that gene expression changes deep into starvation. Surprisingly, relative expression of germline-enriched genes increases for days. We conditionally degrade the large subunit of RNA polymerase II using the auxin-inducible degron system and analyze absolute expression levels. We find that somatic transcription is required for survival, but the germline maintains transcriptional quiescence. Thousands of genes are continuously transcribed in the soma, though their absolute abundance declines, such that relative expression of germline transcripts increases given extreme transcript stability. Aberrantly activating transcription in starved germ cells compromises reproduction, demonstrating important physiological function of transcriptional quiescence. This work reveals alternative somatic and germline gene-regulatory strategies during starvation, with the soma maintaining a robust transcriptional response to support survival and the germline maintaining transcriptional quiescence to support future reproductive success.

Indexed as

Caenorhabditis elegans ProteinsStarvationAnimalsCaenorhabditis elegansGene Expression Regulation, DevelopmentalGerm CellsIndoleacetic AcidsRNA Polymerase IICaenorhabditis elegans ProteinsIndoleacetic AcidsRNA Polymerase IIarrestcellular quiescenceCP: Developmental biologyCP: Molecular biologydiapausegermlineprimordial germ cellsstarvationtranscriptiontranscript stability

Identifiers

PMID36223742
PMCPMC9608353
OpenAlexW4304196160

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.