Evidence map›Paper›PMID 36223427›Full record

ArticlePLoS pathogens2022

Inhibitors of ApiAP2 protein DNA binding exhibit multistage activity against Plasmodium parasites.

Timothy James Russell, Erandi K De Silva, Valerie M Crowley, Kathryn Shaw-Saliba, Namita Dube, Gabrielle Josling, Charisse Flerida A Pasaje, Irene Kouskoumvekaki, Gianni Panagiotou, Jacquin C Niles and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  5. Article
  6. Review
  7. AeLife · 2024
    Article
  8. Article
  9. Article
  10. Review
  11. Microorganisms · 2023
    Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 5 countries.

Timothy James RussellDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, State College, Pennsylvania, United States of America.ORCID 0000-0001-6651-6366
Erandi K De SilvaLewis-Singler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America.
Valerie M CrowleyDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, State College, Pennsylvania, United States of America.
Kathryn Shaw-SalibaDepartment of Molecular Biology and Immunology, Malaria Research Institute, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America.
Namita DubeDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, State College, Pennsylvania, United States of America.
Gabrielle JoslingDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, State College, Pennsylvania, United States of America.
Charisse Flerida A PasajeDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
Irene KouskoumvekakiDepartment of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark.
Gianni PanagiotouSystems Biology and Bioinformatics, Leibniz Institute for Natural Products Research and Infection Biology, Hans Knöll Institute, Jena, Germany.
Jacquin C NilesDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
Marcelo Jacobs-LorenaDepartment of Molecular Biology and Immunology, Malaria Research Institute, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America.
C Denise OkaforDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, State College, Pennsylvania, United States of America.
Francisco-Javier GamoGlobal Health Medicines, GlaxoSmithKline, Tres Cantos, Spain.
Manuel LlinásDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, State College, Pennsylvania, United States of America.ORCID 0000-0002-6173-5882
Pennsylvania State University · USJohns Hopkins University · USMassachusetts Institute of Technology · USChinese University of Hong Kong · HKGlaxoSmithKline (Spain) · ESPrinceton University · USTechnical University of Denmark · DK

Funding

Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
Dissecting the role of ApiAP2 proteins in transcriptional regulation during Plasmodium falciparum developmentR01AI125565 · NIAID · PENNSYLVANIA STATE UNIVERSITY, THE · PI LLINAS, MANUEL · 2016 to 2020
$1.9M
Regulation of Plasmodium falciparum transcriptionR01AI076276 · NIAID · PRINCETON UNIVERSITY · PI LLINAS, MANUEL · 2009 to 2013
$1.8M
Eukaryotic Gene Regulation (EGR) Predoctoral Training ProgramT32GM125592 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI REESE, JOSEPH C · 2018 to 2022
$920k
NIAID NIH HHS R01 AI076276NIAID NIH HHS R01 AI125565NIGMS NIH HHS P50 GM071508NIGMS NIH HHS T32 GM125592
6 · The paper itself

Abstract

Plasmodium parasites are reliant on the Apicomplexan AP2 (ApiAP2) transcription factor family to regulate gene expression programs. AP2 DNA binding domains have no homologs in the human or mosquito host genomes, making them potential antimalarial drug targets. Using an in-silico screen to dock thousands of small molecules into the crystal structure of the AP2-EXP (Pf3D7_1466400) AP2 domain (PDB:3IGM), we identified putative AP2-EXP interacting compounds. Four compounds were found to block DNA binding by AP2-EXP and at least one additional ApiAP2 protein. Our top ApiAP2 competitor compound perturbs the transcriptome of P. falciparum trophozoites and results in a decrease in abundance of log2 fold change > 2 for 50% (46/93) of AP2-EXP target genes. Additionally, two ApiAP2 competitor compounds have multi-stage anti-Plasmodium activity against blood and mosquito stage parasites. In summary, we describe a novel set of antimalarial compounds that interact with AP2 DNA binding domains. These compounds may be used for future chemical genetic interrogation of ApiAP2 proteins or serve as starting points for a new class of antimalarial therapeutics.

Indexed as

AntimalarialsDNA-Binding ProteinsPlasmodiumDNAHumansProtozoan ProteinsAntimalarialsDNADNA-Binding ProteinsProtozoan Proteins

Identifiers

PMID36223427
PMCPMC9591056
OpenAlexW4304758050

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.