Evidence map›Paper›PMID 36222652›Full record

ArticleeLife2022

Antiviral function and viral antagonism of the rapidly evolving dynein activating adaptor NINL.

Donté Alexander Stevens, Christopher Beierschmitt, Swetha Mahesula, Miles R Corley, John Salogiannis, Brian V Tsu, Bryant Cao, Andrew P Ryan, Hiroyuki Hakozawki, Samara L Reck-Peterson and 1 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

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  11. Ndel1 modulates dynein activation in two distinct ways.bioRxiv : the preprint server for biology · 2023
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Donté Alexander Stevens *Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, United States.ORCID 0000-0002-3732-9972
Christopher Beierschmitt *Department of Molecular Biology, University of California, San Diego, La Jolla, United States.ORCID 0000-0003-0151-1091
Swetha MahesulaDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, United States.
Miles R CorleyDepartment of Molecular Biology, University of California, San Diego, La Jolla, United States.
John SalogiannisDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, United States.
Brian V TsuDepartment of Molecular Biology, University of California, San Diego, La Jolla, United States.ORCID 0000-0003-0268-8323
Bryant CaoDepartment of Molecular Biology, University of California, San Diego, La Jolla, United States.
Andrew P RyanDepartment of Molecular Biology, University of California, San Diego, La Jolla, United States.ORCID 0000-0002-2630-9837
Hiroyuki HakozawkiNikon Imaging Center at UC San Diego, University of California, San Diego, San Diego, United States.
Samara L Reck-PetersonDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, United States.ORCID 0000-0002-1553-465X
Matthew D DaughertyDepartment of Molecular Biology, University of California, San Diego, La Jolla, United States.ORCID 0000-0002-4879-9603
University of California San Diego · USHoward Hughes Medical Institute · USNikon (United States) · US

Funding

GENETIC MECHANISMS AND REGULATIONT32GM007240 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMPTON, RANDOLPH Y. · 1985 to 2019
$23.8M
Pathogen-driven evolution of innate antiviral defense mechanismsR35GM133633 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Matthew Daugherty · 2019 to 2026
$3.3M
Mechanisms of microtubule-based transportR35GM141825 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI RECK-PETERSON, SAMARA L · 2021 to 2025
$1.9M
Howard Hughes Medical InstituteNIGMS NIH HHS R35 GM133633NIGMS NIH HHS R35 GM141825NIGMS NIH HHS T32 GM007240
6 · The paper itself

Abstract

Viruses interact with the intracellular transport machinery to promote viral replication. Such host-virus interactions can drive host gene adaptation, leaving signatures of pathogen-driven evolution in host genomes. Here, we leverage these genetic signatures to identify the dynein activating adaptor, ninein-like (NINL), as a critical component in the antiviral innate immune response and as a target of viral antagonism. Unique among genes encoding components of active dynein complexes, NINL has evolved under recurrent positive (diversifying) selection, particularly in its carboxy-terminal cargo-binding region. Consistent with a role for NINL in host immunity, we demonstrate that NINL knockout cells exhibit an impaired response to interferon, resulting in increased permissiveness to viral replication. Moreover, we show that proteases encoded by diverse picornaviruses and coronaviruses cleave and disrupt NINL function in a host- and virus-specific manner. Our work reveals the importance of NINL in the antiviral response and the utility of using signatures of host-virus genetic conflicts to uncover new components of antiviral immunity and targets of viral antagonism.

Indexed as

DyneinsVirusesImmunity, InnateVirus ReplicationDyneinsdyneinhost–virus evolutionhumanimmunologyinfectious diseaseinflammationinnate antiviral immunitymicrobiologymicrotubule-based transportviral antagonistviral proteaseviruses

Identifiers

PMID36222652
PMCPMC9651953
OpenAlexW4304692422

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.