Evidence map›Paper›PMID 36222515›Full record

ArticleJournal of clinical microbiology2022

A Prolonged Outbreak of Human Adenovirus A31 (HAdV-A31) Infection on a Pediatric Hematopoietic Stem Cell Transplantation Ward with Whole Genome Sequencing Evidence of International Linkages.

Ramzi Fattouh, Patrick J Stapleton, AliReza Eshaghi, Angela D Thomas, Michelle E Science, Tal Schechter, Laurie Streitenberger, Petr Hubacek, Yvonne C W Yau, Martha Brown and 5 more

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. The seroprevalence of adenoviruses since 2000Emerging microbes & infections · 2025
    Review
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Ramzi Fattouh *Division of Microbiology, The Hospital for Sick Childrengrid.42327.30 (SickKids), Toronto, Ontario, Canada.ORCID 0000-0001-6573-6367
Patrick J Stapleton *Division of Microbiology, The Hospital for Sick Childrengrid.42327.30 (SickKids), Toronto, Ontario, Canada.ORCID 0000-0003-4724-9121
AliReza EshaghiDepartment of Laboratory Medicine and Pathobiology, University of Torontogrid.17063.33, Toronto, Ontario, Canada.
Angela D ThomasInfection Prevention and Control, The Hospital for Sick Childrengrid.42327.30, Toronto, Ontario, Canada.
Michelle E ScienceDivision of Infectious Diseases, The Hospital for Sick Childrengrid.42327.30, Toronto, Ontario, Canada.
Tal SchechterDepartment of Paediatrics, University of Torontogrid.17063.33, Toronto, Ontario, Canada.
Laurie StreitenbergerInfection Prevention and Control, The Hospital for Sick Childrengrid.42327.30, Toronto, Ontario, Canada.
Petr HubacekDepartment of Medical Microbiology, University Hospital Motol, Prague, Czech Republic.
Yvonne C W YauDivision of Microbiology, The Hospital for Sick Childrengrid.42327.30 (SickKids), Toronto, Ontario, Canada.
Martha BrownDepartment of Laboratory Medicine and Pathobiology, University of Torontogrid.17063.33, Toronto, Ontario, Canada.
Morag R GrahamNational Microbiology Laboratory, Public Health Agency of Canadagrid.415368.d, Winnipeg, Manitoba, Canada.
Jonathan B GubbayDepartment of Laboratory Medicine and Pathobiology, University of Torontogrid.17063.33, Toronto, Ontario, Canada.ORCID 0000-0003-0026-3786
Aaron J CampigottoDivision of Microbiology, The Hospital for Sick Childrengrid.42327.30 (SickKids), Toronto, Ontario, Canada.
Samir N PatelDepartment of Laboratory Medicine and Pathobiology, University of Torontogrid.17063.33, Toronto, Ontario, Canada.
Susan E RichardsonDivision of Microbiology, The Hospital for Sick Childrengrid.42327.30 (SickKids), Toronto, Ontario, Canada.ORCID 0000-0002-7751-7628

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A surge in hematopoietic stem cell transplantation (HSCT) human adenovirus A31 (HAdV-A31) infections was initially observed in late 2014/2015 at SickKids (SK) Hospital, Toronto, Canada. In response, enhanced laboratory monitoring for all adenovirus infections was conducted. Positive samples underwent genotyping, viral culture, and, in selected cases, whole-genome sequencing (WGS). HAdV-A31 specimens/DNA obtained from four international pediatric HSCT centers also underwent WGS. During the SK outbreak period (27 October 2014 to 31 October 2018), 17/20 HAdV-A31 isolates formed a distinct clade with 0 to 8 mutations between the closest neighbors. Surveillance before and after the outbreak detected six additional HAdV-A31 HSCT cases; three of the four sequenced cases clustered within the outbreak clade. Two SK outbreak isolates were identical to sequences from two patients in an outbreak in England. Three SK non-outbreak sequences also had high sequence similarity to strains from three international centers. Environmental PCR testing of the HSCT ward showed significant adenovirus contamination. Despite intense infection control efforts, we observed re-occurrence of infection with the outbreak strain. Severe but nonfatal infection was observed more commonly with HAdV-A31 compared to other genotypes, except HAdV-C1. Our findings strongly implicate nosocomial spread of HAdV-A31 over 10 years on a HSCT unit and demonstrate the value of WGS in defining and mapping the outbreak. Close linkages among strains in different countries suggest international dissemination, though the mechanism is undetermined. This large, extended outbreak emphasizes the pre-eminent role of HAdV-A31 in causing intractable pediatric HSCT outbreaks of severe illness worldwide.

Indexed as

Adenoviridae InfectionsAdenoviruses, HumanAdenovirus Infections, HumanHematopoietic Stem Cell TransplantationChildHospitalsHumansPhylogenyWhole Genome Sequencingadenovirusesbone marrow transplantationhospital infectionsmolecular epidemiology

Identifiers

PMID36222515
PMCPMC9667772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.