ArticleEMBO reports2022
Dissecting the cotranscriptome landscape of plants and their microbiota.
Article in EMBO reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed.
- CRAGE-RB-PI-seq reveals transcriptional dynamics of plant-associated bacteria during root colonization.Nature communications · 2026Article
- Rhizosphere triangular warfare: mechanistic insights for plant- beneficial microbe- pathogen interactions.Frontiers in plant science · 2026Review
- Bioinformatics Workflow for Co-Transcriptome Analysis of Plant-Bacterial Interactions.Methods in molecular biology (Clifton, N.J.) · 2026Article
- Toward a plant biotechnological application of phyllosphere bacteria.Plant biotechnology (Tokyo, Japan) · 2025Article
- Article
- Differential Responses of Methylobacterium and Sphingomonas Species to Multispecies Interactions in the Phyllosphere.Environmental microbiology · 2025Article
- Roles of microbiota in autoimmunity in Arabidopsis leaves.Nature plants · 2024Article
- Bacillus species are core microbiota of resistant maize cultivars that induce host metabolic defense against corn stalk rot.Microbiome · 2024Article
- Unraveling plant-microbe interactions: can integrated omics approaches offer concrete answers?Journal of experimental botany · 2024Article
- Commensal lifestyle regulated by a negative feedback loop between Arabidopsis ROS and the bacterial T2SS.Nature communications · 2024Article
- Strategies for tailoring functional microbial synthetic communities.The ISME journal · 2024Review
- Widespread horizontal gene transfer between plants and bacteria.ISME communications · 2024Article
- How plants manage pathogen infection.EMBO reports · 2024Review
- CLE peptide signaling in plant-microbe interactions.Frontiers in plant science · 2024Review
- A cyclic dipeptide for salinity stress alleviation and the trophic flexibility of endophyte provide insights into saltmarsh plant-microbe interactions.ISME communications · 2024Article
- Phyllosphere microbiome induces host metabolic defence against rice false-smut disease.Nature microbiology · 2023Article
- Dissecting the cotranscriptome landscape of plants and their microbiota.EMBO reports · 2022Article
- Cross-feeding niches among commensal leaf bacteria are shaped by the interaction of strain-level diversity and resource availability.The ISME journal · 2022Article
Corrections and comments
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Authors and funding
7 authors.
Funding
Abstract
Interactions between plants and neighboring microbial species are fundamental elements that collectively determine the structure and function of the plant microbiota. However, the molecular basis of such interactions is poorly characterized. Here, we colonize Arabidopsis leaves with nine plant-associated bacteria from all major phyla of the plant microbiota and profile cotranscriptomes of plants and bacteria six hours after inoculation. We detect both common and distinct cotranscriptome signatures among plant-commensal pairs. In planta responses of commensals are similar to those of a disarmed pathogen characterized by the suppression of genes involved in general metabolism in contrast to a virulent pathogen. We identify genes that are enriched in the genome of plant-associated bacteria and induced in planta, which may be instrumental for bacterial adaptation to the host environment and niche separation. This study provides insights into how plants discriminate among bacterial strains and lays the foundation for in-depth mechanistic dissection of plant-microbiota interactions.
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Registered trials
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