Evidence map›Paper›PMID 36219517›Full record

ArticleFEBS open bio2023

Molecular characterization of accripin11, a soluble shell protein with an acidic C-terminus, identified in the prismatic layer of the Mediterranean fan mussel Pinna nobilis (Bivalvia, Pteriomorphia).

Benazir Khurshid, Daniel J Jackson, Sylvain Engilberge, Sébastien Motreuil, Cédric Broussard, Jérôme Thomas, Françoise Immel, Matthew J Harrington, Peter B Crowley, Daniel Vielzeuf and 2 more

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 4 countries.

Benazir KhurshidLaboratoire Biogéosciences, UMR CNRS-EPHE 6282, Université de Bourgogne - Franche-Comté, Dijon, France.
Daniel J JacksonDepartment of Geobiology, Georg-August University of Göttingen, Germany.
Sylvain EngilbergeStructural Biology Group, European Synchrotron Radiation Facility, Grenoble, France.
Sébastien MotreuilLaboratoire Biogéosciences, UMR CNRS-EPHE 6282, Université de Bourgogne - Franche-Comté, Dijon, France.
Cédric BroussardPlateforme Protéomique 3P5, Université Paris Descartes, France.
Jérôme ThomasLaboratoire Biogéosciences, UMR CNRS-EPHE 6282, Université de Bourgogne - Franche-Comté, Dijon, France.ORCID 0000-0002-1602-4416
Françoise ImmelChrono-Environnement, UMR 6249 CNRS, Université de Bourgogne Franche-Comté, Besançon, France.
Matthew J HarringtonDepartment of Chemistry, McGill University, Montreal, Canada.
Peter B CrowleySchool of Biological and Chemical Sciences, National University of Ireland, Galway, Ireland.
Daniel VielzeufLaboratoire CINaM-CNRS, Université d'Aix-Marseille, France.
Jonathan PerrinSynchrotron SOLEIL, Beamline ANATOMIX, Gif-sur-Yvette, France.
Frédéric MarinLaboratoire Biogéosciences, UMR CNRS-EPHE 6282, Université de Bourgogne - Franche-Comté, Dijon, France.ORCID 0000-0001-8319-1735
Centre National de la Recherche Scientifique · FRDélégation Paris 5 · FREuropean Synchrotron Radiation Facility · FRMcGill University · CAOllscoil na Gaillimhe – University of Galway · IESynchrotron soleil · FRUniversity of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have identified a novel shell protein, accripin11, as a major soluble component of the calcitic prisms of the fan mussel Pinna nobilis. Initially retrieved from a cDNA library, its full sequence is confirmed here by transcriptomic and proteomic approaches. The sequence of the mature protein is 103 residues with a theoretical molecular weight of 11 kDa and is moderately acidic (pI 6.74) except for its C-terminus which is highly enriched in aspartic acid. The protein exhibits a peculiar cysteine pattern in its central domain. The full sequence shares similarity with six other uncharacterized molluscan shell proteins from the orders Ostreida, Pteriida and Mytilida, all of which are pteriomorphids and produce a phylogenetically restricted pattern of nacro-prismatic shell microstructures. This suggests that accripin11 is a member of a family of clade-specific shell proteins. A 3D model of accripin11 was predicted with AlphaFold2, indicating that it possesses three short alpha helices and a disordered C-terminus. Recombinant accripin11 was tested in vitro for its ability to influence the crystallization of CaCO

Indexed as

BivalviaProteomicsAnimalsAspartic AcidCalcium CarbonateProteinsAspartic AcidCalcium CarbonateProteinsAlphafold2biomineralcalcitic prismsmollusk shellprotein

Identifiers

PMID36219517
PMCPMC9808598
OpenAlexW4304203412

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.