Evidence map›Paper›PMID 36218247›Full record

ArticleeLife2022

EZ Clear for simple, rapid, and robust mouse whole organ clearing.

Chih-Wei Hsu, Juan Cerda, Jason M Kirk, Williamson D Turner, Tara L Rasmussen, Carlos P Flores Suarez, Mary E Dickinson, Joshua D Wythe

Abstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed.

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  15. Synaptic Gpr85 Influences Cerebellar-Granule-Cell Electrical Properties and Light-Induced Behavior in Zebrafish.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Chih-Wei HsuDepartment of Integrative Physiology, Baylor College of Medicine, Houston, United States.ORCID https://orcid.org/0000-0002-9591-9567
Juan CerdaDepartment of Integrative Physiology, Baylor College of Medicine, Houston, United States.
Jason M KirkOptical Imaging and Vital Microscopy Core, Advance Technology Cores, Baylor College of Medicine, Houston, United States.
Williamson D TurnerDepartment of Integrative Physiology, Baylor College of Medicine, Houston, United States.
Tara L RasmussenDepartment of Integrative Physiology, Baylor College of Medicine, Houston, United States.
Carlos P Flores SuarezDepartment of Integrative Physiology, Baylor College of Medicine, Houston, United States.
Mary E DickinsonDepartment of Integrative Physiology, Baylor College of Medicine, Houston, United States.
Joshua D WytheDepartment of Integrative Physiology, Baylor College of Medicine, Houston, United States.ORCID https://orcid.org/0000-0002-3225-2937

Funding

Structural and Molecular Phenotyping of Embryonic Development through Multi-Modal Optical ImagingR01HL146745 · NHLBI · UNIVERSITY OF HOUSTON · PI MAYERICH, DAVID · 2019 to 2023
$3.7M
BCM-Rice resource for the analysis of somatic gene editing in miceU42OD026645 · OD · BAYLOR COLLEGE OF MEDICINE · PI DICKINSON, MARY E, HEANEY, JASON D. · 2018 to 2022
$3.5M
Training Program in Translational Biology and Molecular MedicineT32GM088129 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI ROONEY, CLIONA M., VAN DEN VEYVER, IGNATIA B · 2010 to 2019
$3.0M
Decoding the Molecular and Cellular Mechanisms of Mutant KRAS-driven Brain Arteriovenous MalformationsR01HL159159 · NHLBI · UNIVERSITY OF VIRGINIA · PI WYTHE, JOSHUA D. · 2022 to 2025
$2.6M
Dynamic regulation of embryonic endothelial cell migration in response to hemodynamic forceR01HD099026 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI DICKINSON, MARY E · 2019 to 2023
$2.5M
Tecan EVO GenePaint robotS10OD016167 · OD · BAYLOR COLLEGE OF MEDICINE · PI LJUNGBERG, CECILIA · 2013 to 2013
$215k
NHLBI NIH HHS R01 HL146745NHLBI NIH HHS R01 HL159159NICHD NIH HHS R01 HD099026NIGMS NIH HHS T32 GM088129NIH HHS S10 OD016167NIH HHS U42 OD026645
6 · The paper itself

Abstract

Tissue clearing for whole organ cell profiling has revolutionized biology and imaging for exploration of organs in three-dimensional space without compromising tissue architecture. But complicated, laborious procedures, or expensive equipment, as well as the use of hazardous, organic solvents prevent the widespread adoption of these methods. Here, we report a simple and rapid tissue clearing method, EZ Clear, that can clear whole adult mouse organs in 48 hr in just three simple steps. Samples stay at room temperature and remain hydrated throughout the clearing process, preserving endogenous and synthetic fluorescence, without altering sample size. After wholemount clearing and imaging, samples processed with EZ Clear can be subjected to downstream applications, such as tissue embedding and cryosectioning followed by standard histology or immunofluorescent staining without loss of fluorescence signal from endogenous or synthetic reporters. Furthermore, we demonstrate that wholemount adult mouse brains processed with EZ Clear can be successfully immunolabeled for fluorescent imaging while still retaining signal from endogenous fluorescent reporters. Overall, the simplicity, speed, and flexibility of EZ Clear make it easy to adapt and implement in diverse imaging modalities in biomedical research.

Indexed as

Coloring AgentsImaging, Three-DimensionalAnimalsBrainMiceSolventsStaining and LabelingColoring AgentsSolvents3D imagingcancer biologydevelopmental biologymouseneurosciencetissue clearing

Identifiers

PMID36218247
PMCPMC9555867

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.