Evidence map›Paper›PMID 36217822›Full record

ArticleEcology2023

A flexible and efficient Bayesian implementation of point process models for spatial capture-recapture data.

Wei Zhang, Joseph D Chipperfield, Janine B Illian, Pierre Dupont, Cyril Milleret, Perry de Valpine, Richard Bischof

Abstract read
In one paragraph

Article in Ecology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Map of death: spatially explicit mortality of the grey wolf.Proceedings. Biological sciences · 2025
    Article
  3. Article
  4. Environmental variability across space and time drives the recolonization pattern of a historically persecuted large carnivore.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Wei ZhangDepartment of Environmental Science, Policy and Management, University of California Berkeley, Berkeley, California, USA.ORCID 0000-0002-7554-5115
Joseph D ChipperfieldFaculty of Life Sciences and Natural Resource Management, Norwegian University of Life Sciences, Trondheim, Norway.
Janine B IllianSchool of Mathematics and Statistics, University of Glasgow, Glasgow, UK.
Pierre DupontFaculty of Life Sciences and Natural Resource Management, Norwegian University of Life Sciences, Trondheim, Norway.ORCID 0000-0002-7438-7995
Cyril MilleretFaculty of Life Sciences and Natural Resource Management, Norwegian University of Life Sciences, Trondheim, Norway.
Perry de ValpineDepartment of Environmental Science, Policy and Management, University of California Berkeley, Berkeley, California, USA.
Richard BischofFaculty of Life Sciences and Natural Resource Management, Norwegian University of Life Sciences, Trondheim, Norway.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spatial capture-recapture (SCR) is now routinely used for estimating abundance and density of wildlife populations. A standard SCR model includes sub-models for the distribution of individual activity centers (ACs) and for individual detections conditional on the locations of these ACs. Both sub-models can be expressed as point processes taking place in continuous space, but there is a lack of accessible and efficient tools to fit such models in a Bayesian paradigm. Here, we describe a set of custom functions and distributions to achieve this. Our work allows for more efficient model fitting with spatial covariates on population density, offers the option to fit SCR models using the semi-complete data likelihood (SCDL) approach instead of data augmentation, and better reflects the spatially continuous detection process in SCR studies that use area searches. In addition, the SCDL approach is more efficient than data augmentation for simple SCR models while losing its advantages for more complicated models that account for spatial variation in either population density or detection. We present the model formulation, test it with simulations, quantify computational efficiency gains, and conclude with a real-life example using non-invasive genetic sampling data for an elusive large carnivore, the wolverine (Gulo gulo) in Norway.

Indexed as

Animals, WildAnimalsBayes TheoremNorwayPopulation DensityProbabilityarea searchbinomial point processcontinuous samplingNIMBLEnon-invasive genetic samplingPoisson point processspatial capture-recapturewolverine

Identifiers

PMID36217822
PMCPMC10078592

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.