Evidence map›Paper›PMID 36217571›Full record

ArticleJournal of Korean medical science2022

Evaluation of In-Hospital Cluster of COVID-19 Associated With a Patient With Prolonged Viral Shedding Using Whole-Genome Sequencing.

Jiwon Jung, Jungmin Lee, Sun-Kyung Kim, Soyeon Park, Young-Ju Lim, Eun Ok Kim, Heedo Park, Man-Seong Park, Sung-Han Kim

Open access · goldAbstract read
In one paragraph

Article in Journal of Korean medical science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jiwon Jung *Department of Infectious Diseases, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea.ORCID https://orcid.org/0000-0003-4333-3270
Jungmin Lee *Department of Microbiology, Institute for Viral Diseases, Vaccine Innovation Center, College of Medicine, Korea University, Seoul, Korea.ORCID https://orcid.org/0000-0002-7952-2877
Sun-Kyung KimOffice for Infection Control, Asan Medical Center, Seoul, Korea.ORCID https://orcid.org/0000-0001-6063-488X
Soyeon ParkOffice for Infection Control, Asan Medical Center, Seoul, Korea.ORCID https://orcid.org/0000-0002-7850-6373
Young-Ju LimOffice for Infection Control, Asan Medical Center, Seoul, Korea.ORCID https://orcid.org/0000-0002-8529-2676
Eun Ok KimOffice for Infection Control, Asan Medical Center, Seoul, Korea.ORCID https://orcid.org/0000-0001-5957-5421
Heedo ParkDepartment of Microbiology, Institute for Viral Diseases, Vaccine Innovation Center, College of Medicine, Korea University, Seoul, Korea.ORCID https://orcid.org/0000-0001-9992-5131
Man-Seong ParkDepartment of Microbiology, Institute for Viral Diseases, Vaccine Innovation Center, College of Medicine, Korea University, Seoul, Korea. manseong.park@gmail.com.ORCID https://orcid.org/0000-0002-7427-486X
Sung-Han KimDepartment of Infectious Diseases, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea.ORCID https://orcid.org/0000-0002-6596-8253
Asan Medical Center · KRInternational Vaccine Institute · KRUlsan College · KR

Funding

Korea National Institute of Health 2022-ER1609-00National Research Foundation of Korea NRF-2022M3A9I2017241
6 · The paper itself

Abstract

backgroundPatients with hematologic malignancies may produce replication-competent virus beyond 20 days of SARS-CoV-2 infection. However, data regarding the transmission of SARS-CoV-2 from patients with prolonged viral shedding is limited.

methodsIn May 2022, four additional cases of COVID-19 were reported in a hematologic ward at a tertiary care hospital in South Korea, after an 8-week isolation of a patient with prolonged viral shedding. We performed whole-genome sequencing (WGS) of SARS-CoV-2 to evaluate the possibility of post-isolation transmission from this prolonged viral shedding.

resultsA patient (case 1) with acute myeloid leukemia was released from isolation 54 days after the diagnosis of COVID-19 based on rising Ct value of up to 29.3, and moved to a six-patient room. On days 10 and 11 post-isolation, his doctor (case 2) and 2 patients who were his roommates (case 3, 4) had positive SARS-CoV-2 PCR results. Additionally, 16 days post-isolation, another patient (case 5) in a remote room had positive SARS-CoV-2 PCR result. All the three patients were hospitalized for ≥ 14 days when they were diagnosed with SARS-CoV-2 infection. Except for case 3, the remaining 4 cases were available for WGS, which revealed that case 1 exhibited a 7 nucleotides difference in comparison to cases 4 and 5 and case 2 displayed a 20 nucleotides difference compared with case 1, while sequences of cases 4 and 5 were identical.

conclusionsDespite the possibility of transmission from the patient with prolonged viral shedding, no evidence of the transmission of SARS-CoV-2 from the patient with prolonged positive RT-PCR using WGS was found.

Indexed as

COVID-19HospitalsHumansNucleotidesRNA, ViralSARS-CoV-2Virus SheddingNucleotidesRNA, ViralCOVID-19Hematologic MalignancyPost-Isolation TransmissionSARS-CoV-2Whole-Genome Sequencing

Identifiers

PMID36217571
PMCPMC9550637
OpenAlexW4296734012

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.