Evidence map›Paper›PMID 36216841›Full record

ArticleNature communications2022

Structural insights into PA3488-mediated inactivation of Pseudomonas aeruginosa PldA.

Xiaoyun Yang, Zongqiang Li, Liang Zhao, Zhun She, Zengqiang Gao, Sen-Fang Sui, Yuhui Dong, Yanhua Li

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Antibiotics (Basel, Switzerland) · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xiaoyun Yang *Department of Biology, Southern University of Science and Technology, Shenzhen, 518055, Guangdong Province, China.ORCID 0000-0002-1374-2201
Zongqiang Li *Department of Biology, Southern University of Science and Technology, Shenzhen, 518055, Guangdong Province, China.ORCID 0000-0002-2848-0371
Liang Zhao *Department of Biology, Southern University of Science and Technology, Shenzhen, 518055, Guangdong Province, China.
Zhun SheMultidiscipline Research Center, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, China.
Zengqiang GaoMultidiscipline Research Center, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, China.
Sen-Fang SuiDepartment of Biology, Southern University of Science and Technology, Shenzhen, 518055, Guangdong Province, China. suisf@mail.tsinghua.edu.cn.ORCID 0000-0001-5253-2592
Yuhui DongMultidiscipline Research Center, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, China. dongyh@ihep.ac.cn.ORCID 0000-0002-4422-4685
Yanhua LiMultidiscipline Research Center, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, China. yhli@ihep.ac.cn.ORCID 0000-0002-2324-3916

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PldA, a phospholipase D (PLD) effector, catalyzes hydrolysis of the phosphodiester bonds of glycerophospholipids-the main component of cell membranes-and assists the invasion of the opportunistic pathogen Pseudomonas aeruginosa. As a cognate immunity protein, PA3488 can inhibit the activity of PldA to avoid self-toxicity. However, the precise inhibitory mechanism remains elusive. We determine the crystal structures of full-length and truncated PldA and the cryogenic electron microscopy structure of the PldA-PA3488 complex. Structural analysis reveals that there are different intermediates of PldA between the "open" and "closed" states of the catalytic pocket, accompanied by significant conformational changes in the "lid" region and the peripheral helical domain. Through structure-based mutational analysis, we identify the key residues responsible for the enzymatic activity of PldA. Together, these data provide an insight into the molecular mechanisms of PldA invasion and its neutralization by PA3488, aiding future design of PLD-targeted inhibitors and drugs.

Indexed as

Phospholipase DPseudomonas aeruginosaBacterial ProteinsGlycerophospholipidsBacterial ProteinsGlycerophospholipidsPhospholipase D

Identifiers

PMID36216841
PMCPMC9550806

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.