Evidence map›Paper›PMID 36216579›Full record

ArticleThe Journal of antimicrobial chemotherapy2022

A high-efficiency scar-free genome-editing toolkit for Acinetobacter baumannii.

Rubén de Dios, Kavita Gadar, Ronan R McCarthy

Open access · hybridAbstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

  1. Disruption ofVirulence · 2026
    Article
  2. Article
  3. Phenylacetic acid mediatesMicrobiology (Reading, England) · 2026
    Article
  4. Threat and Control ofFoods (Basel, Switzerland) · 2025
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Rubén de DiosDivision of Biosciences, Department of Life Sciences, Centre of Inflammation Research and Translational Medicine, College of Health and Life Sciences, Brunel University London, Uxbridge, UB8 3PH, UK.
Kavita GadarDivision of Biosciences, Department of Life Sciences, Centre of Inflammation Research and Translational Medicine, College of Health and Life Sciences, Brunel University London, Uxbridge, UB8 3PH, UK.
Ronan R McCarthyDivision of Biosciences, Department of Life Sciences, Centre of Inflammation Research and Translational Medicine, College of Health and Life Sciences, Brunel University London, Uxbridge, UB8 3PH, UK.
Brunel University of London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/V007823/1British Society for Antimicrobial Chemotherapy BSAC-2018-0095Wellcome Trust
6 · The paper itself

Abstract

backgroundThe current mutagenesis tools for Acinetobacter baumannii leave selection markers or residual sequences behind, or involve tedious counterselection and screening steps. Furthermore, they are usually adapted for model strains, rather than for MDR clinical isolates.

objectivesTo develop a scar-free genome-editing tool suitable for chromosomal and plasmid modifications in MDR A. baumannii AB5075.

methodsWe prove the efficiency of our adapted genome-editing system by deleting the multidrug efflux pumps craA, cmlA5 and resistance island 2 (RI2), as well as curing plasmid p1AB5075, and combining these mutations. We then characterized the susceptibility of the mutants compared with the WT to different antibiotics (i.e. chloramphenicol, amikacin and tobramycin) by disc diffusion assays and determined the MIC for each strain.

resultsWe successfully adapted the genome-editing protocol to A. baumannii AB5075, achieving a double recombination frequency close to 100% and routinely securing the construction of a mutant within 10 working days. Furthermore, we show that both CraA and p1AB5075 are involved in chloramphenicol resistance, and that RI2 and p1AB5075 play a role in resistance to amikacin and tobramycin.

conclusionsWe have developed a versatile and highly efficient genome-editing tool for A. baumannii. We have demonstrated it can be used to modify both the chromosome and native plasmids. By challenging the method, we show the role of CraA and p1AB5075 in antibiotic resistance.

Indexed as

Acinetobacter baumanniiAmikacinAnti-Bacterial AgentsChloramphenicolDrug Resistance, Multiple, BacterialMicrobial Sensitivity TestsTobramycinAmikacinAnti-Bacterial AgentsChloramphenicolTobramycin

Identifiers

PMID36216579
PMCPMC9704439
OpenAlexW4304128632

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.