Evidence map›Paper›PMID 36215462›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Structural basis for host recognition and superinfection exclusion by bacteriophage T5.

Bert van den Berg, Augustinas Silale, Arnaud Baslé, Astrid F Brandner, Sophie L Mader, Syma Khalid

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Bacterial immune systems.Antonie van Leeuwenhoek · 2026
    Review
  3. Article
  4. Auxin (Indole-3-acetic acid) modulation of quorum sensing enhances phage susceptibility in Klebsiella pneumoniae.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. mBio · 2026
    Article
  9. Article
  10. Small siphophage binding to an open state of the LptDE outer membrane lipopolysaccharide translocon.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Bert van den BergBiosciences Institute, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom.ORCID 0000-0003-1966-8804
Augustinas SilaleBiosciences Institute, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom.ORCID 0000-0003-3338-2087
Arnaud BasléBiosciences Institute, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom.ORCID 0000-0002-4899-3086
Astrid F BrandnerDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom.ORCID 0000-0002-5023-8127
Sophie L MaderDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom.ORCID 0000-0002-3011-3319
Syma KhalidDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom.ORCID 0000-0002-3694-5044
Newcastle University · GBUniversity of Oxford · GB

Funding

Wellcome TrustWellcome Trust (WT) 214222/Z/18/Z
6 · The paper itself

Abstract

A key but poorly understood stage of the bacteriophage life cycle is the binding of phage receptor-binding proteins (RBPs) to receptors on the host cell surface, leading to injection of the phage genome and, for lytic phages, host cell lysis. To prevent secondary infection by the same or a closely related phage and nonproductive phage adsorption to lysed cell fragments, superinfection exclusion (SE) proteins can prevent the binding of RBPs via modulation of the host receptor structure in ways that are also unclear. Here, we present the cryogenic electron microscopy (cryo-EM) structure of the phage T5 outer membrane (OM) receptor FhuA in complex with the T5 RBP pb5, and the crystal structure of FhuA complexed to the OM SE lipoprotein Llp. Pb5 inserts four loops deeply into the extracellular lumen of FhuA and contacts the plug but does not cause any conformational changes in the receptor, supporting the view that DNA translocation does not occur through the lumen of OM channels. The FhuA-Llp structure reveals that Llp is periplasmic and binds to a nonnative conformation of the plug of FhuA, causing the inward folding of two extracellular loops via "reverse" allostery. The inward-folded loops of FhuA overlap with the pb5 binding site, explaining how Llp binding to FhuA abolishes further infection of

Indexed as

BacteriophagesEscherichia coli ProteinsSuperinfectionBacterial Outer Membrane ProteinsBacteriophage ReceptorsEscherichia coliHumansLipoproteinsReceptors, VirusT-PhagesBacterial Outer Membrane ProteinsBacteriophage ReceptorsEscherichia coli ProteinsLipoproteinsReceptors, Virusbacteriophage T5FhuAlipoproteinsuperinfection exclusionTonB-dependent transporter

Identifiers

PMID36215462
PMCPMC9586334
OpenAlexW4304099390

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.