Evidence map›Paper›PMID 36214948›Full record

ArticleMolecular biology reports2022

Isolation and genetic analysis of Porcine circovirus 2 in southern India evidences high circulation of Porcine circovirus 2d genotype.

S Parthiban, A Ramesh, Anbu Kumar Karuppannan, G Dhinakar Raj, S Hemalatha, M Parthiban, K Senthilkumar, D Balasubramaniyam, R Sumanth Kumar, S Ranganatha and 1 more

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Article in Molecular biology reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

S ParthibanDepartment of Animal Biotechnology, Madras Veterinary College, Chennai, 600 007, India.
A RameshVaccine Research Centre-Viral Vaccines, CAHS, MMC, Chennai, 600 051, India. drvetaramesh2021@gmail.com.ORCID http://orcid.org/0000-0002-9852-4245
Anbu Kumar KaruppannanVaccine Research Centre-Viral Vaccines, CAHS, MMC, Chennai, 600 051, India.
G Dhinakar RajDepartment of Animal Biotechnology, Madras Veterinary College, Chennai, 600 007, India.
S HemalathaDepartment of Veterinary Pathology, MVC, Chennai, 600 007, India.
M ParthibanDepartment of Animal Biotechnology, Madras Veterinary College, Chennai, 600 007, India.
K SenthilkumarPost Graduate Research Institute in Animal Sciences, Kattupakkam, Chennai, 603 203, India.
D BalasubramaniyamPost Graduate Research Institute in Animal Sciences, Kattupakkam, Chennai, 603 203, India.
R Sumanth KumarInstitute of Animal Health and Veterinary Biologicals, Bengaluru, 560 024, India.
S RanganathaInstitute of Animal Health and Veterinary Biologicals, Bengaluru, 560 024, India.
Chintu RavishankarDepartment of Veterinary Microbiology, COVAS, Pookode, Kerala Veterinary and Animal Sciences University, Pookode, India.
Tamil Nadu Veterinary and Animal Sciences University · INInstitute of Animal Health and Veterinary Biologicals · INInstitut de Recherche Vaccinale · FRKerala Veterinary and Animal Sciences University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPorcine circovirus 2 is globally noted swine pathogen with multiple genotypes associated with vast clinical and subclinical outcomes. This study aimed to isolate and characterize PCV2 genotypes circulating in southern states of India. METHODS AND

resultsA total of 434 field samples comprising of serum (n = 273), tissues (n = 109) and swabs (n = 52) collected from swine during 2019 to 2021 from southern states of India were screened for PCV2 by specific polymerase chain reaction (PCR) assay. Molecular prevalence of PCV2 in southern India was found to be 12.21% (n = 53). All the 53 PCV2 positive samples were further subjected to the PCR assay with designed primers targeting full length amplification of ORF2 gene of PCV2 for molecular characterization. Randomly 32 positive samples by full length PCV2-ORF2 gene PCR were sequenced for genotyping. Signature motif and phylogenetic analysis of 32 PCV2 sequences revealed 62.5% (n = 20) prevalence of PCV2d genotype followed by 21.8% (n = 7) of PCV2h or PCV2-IM1 and 15.6% (n = 5) of PCV2b genotypes. Twenty five PCR positive field samples were subjected for virus isolation in PK15 cells and characterized. Out of 25 samples processed 5 (20%) PCV2 isolates obtained in this study were confirmed by PCR and immune fluorescence assay. Molecular characterization of PK15 adapted five PCV2 isolates confirmed circulation of PCV2d, PCV2h and PCV2b genotypes in pigs under field conditions in southern India.

conclusionsIsolation and molecular epidemiological study of PCV2 in southern states of India evidences high circulation of PCV2d genotypes in field conditions in comparison to other genotypes.

Indexed as

Circoviridae InfectionsCircovirusSwine DiseasesAnimalsGenotypePhylogenySwineMolecular epidemiologyPCV2Southern IndiaSwine

Identifiers

PMID36214948
OpenAlexW4303986699

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