Evidence map›Paper›PMID 36214578›Full record

ArticleJournal of virology2022

Complete Genome Sequencing Reveals Unusual Equine Rotavirus A of Bat Origin from India.

A Pathak, B R Gulati, S Maan, S Mor, D Kumar, R Soman, S Punia, D Chaudhary, S K Khurana

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In one paragraph

Article in Journal of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

A PathakIndian Council of Agricultural Research-National Research Centre on Equines, Hisar, Haryana, India.
B R GulatiIndian Council of Agricultural Research-National Research Centre on Equines, Hisar, Haryana, India.ORCID 0000-0002-4338-7941
S MaanDepartment of Animal Biotechnology, College of Veterinary Sciences, LLR University of Veterinary and Animal Sciences, Hisar, Haryana, India.
S MorDepartment of Veterinary Population Medicine, University of Minnesotagrid.17635.36, St. Paul, Minnesota, USA.ORCID 0000-0002-1112-088X
D KumarEquine Breeding Stud, Hisar, Haryana, India.
R SomanIndian Council of Agricultural Research-National Research Centre on Equines, Hisar, Haryana, India.
S PuniaIndian Council of Agricultural Research-National Research Centre on Equines, Hisar, Haryana, India.
D ChaudharyDepartment of Animal Biotechnology, College of Veterinary Sciences, LLR University of Veterinary and Animal Sciences, Hisar, Haryana, India.
S K KhuranaIndian Council of Agricultural Research-National Research Centre on Equines, Hisar, Haryana, India.
National Research Centre on Equines · INLala Lajpat Rai University of Veterinary and Animal Sciences · INUniversity of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rotaviruses are the most common viral agents associated with foal diarrhea. Between 2014 and 2017, the annual prevalence of rotavirus in diarrheic foals ranged between 18 and 28% in Haryana (India). Whole-genome sequencing of two equine rotavirus A (ERVA) isolates (RVA/Horse-wt/IND/ERV4/2017 and RVA/Horse-wt/IND/ERV6/2017) was carried out to determine the genotypic constellations (GCs) of ERVAs. The GCs of both the isolates were G3-P[3]-I8-R3-C3-M3-A9-N3-T3-E3-H6, a unique combination reported for ERVAs so far. Both the isolates carried VP6 of genotype I8, previously unreported from equines. Upon comparison with RVAs of other species, the GC of both isolates was identical to that of a bat rotavirus strain, MSLH14, isolated from China in 2012. The nucleotide sequences of the genes encoding VP3, NSP2, and NSP3 shared >95.81% identity with bat RVA strains isolated from Africa (Gabon). The genes encoding VP1, VP2, VP7, NSP1, and NSP4 shared 94.82% to 97.12% nucleotide identities with the human strains which have zoonotic links to bats (RCH272 and MS2015-1-0001). The VP6 genes of both strains were distinct and had the highest similarity of only 87.08% with that of CMH222, a human strain of bat origin. The phylogenetic analysis and lineage studies revealed that VP7 of both isolates clustered in a new lineage (lineage X) of the G3 genotype with bat, human, and alpaca strains. Similarly, VP4 clustered in a distinct P[3] lineage. These unusual findings highlight the terra incognita of the genomic diversity of equine rotaviruses and support the need for the surveillance of RVAs in animals and humans with a "one health" approach.

Indexed as

Camelids, New WorldChiropteraRotavirusRotavirus InfectionsAnimalsDiarrheaDogsGabonGenome, ViralGenotypeGoatsHorsesHumansNucleotidesPhylogenySheepNucleotidesbatcomplete genomeequinegenotypic constellationrotavirus

Identifiers

PMID36214578
PMCPMC9599578
OpenAlexW4303986683

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.