Evidence map›Paper›PMID 36214449›Full record

ArticleeLife2022

The landscape of transcriptional and translational changes over 22 years of bacterial adaptation.

John S Favate, Shun Liang, Alexander L Cope, Srujana S Yadavalli, Premal Shah

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Transcriptome Profiling ofAntibiotics (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Genome and transcriptomic analysis of the adaptation ofComputational and structural biotechnology journal · 2024
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Subpopulations in Strains ofAntibiotics (Basel, Switzerland) · 2023
    Review
  16. Article
  17. Long-term experimental evolution decouples size and production costs inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Article
  19. Dynamics of bacterial adaptation.Biochemical Society transactions · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

John S FavateDepartment of Genetics, Rutgers University, Piscataway, United States.ORCID 0000-0001-6344-4854
Shun LiangDepartment of Genetics, Rutgers University, Piscataway, United States.
Alexander L CopeDepartment of Genetics, Rutgers University, Piscataway, United States.ORCID 0000-0002-5756-7812
Srujana S YadavalliDepartment of Genetics, Rutgers University, Piscataway, United States.
Premal ShahDepartment of Genetics, Rutgers University, Piscataway, United States.ORCID 0000-0002-8424-4218
Rutgers, The State University of New Jersey · USRutgers Sexual and Reproductive Health and Rights · NL

Funding

IRACDA at Rutgers: INSPIRE Postdoctoral Training ProgramK12GM093854 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Detlev Boison, Gary A. Brewer · 2010 to 2026
$14.7M
The LIN28b-Let7-IMP1 axis in colonic epithelial biologyR01DK056645 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI RUSTGI, ANIL K · 2000 to 2021
$6.8M
Homeostatic Responses to Amino Acid InsufficiencyR01DK109714 · NIDDK · RUTGERS, THE STATE UNIV OF N.J. · PI ANTHONY, TRACY G., WEK, RONALD C · 2016 to 2024
$5.4M
Defining post-transcriptional regulons in intestinal epithelial regenerationR01DK124369 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI HAMILTON, KATHRYN ELIZABETH · 2020 to 2024
$2.6M
Small Proteins and Epitranscriptomic Factors: Emerging Mechanisms in Bacterial Gene RegulationR35GM147566 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI Srujana Samhita Yadavalli · 2022 to 2026
$2.0M
Dynamics and evolution of translational regulationR35GM124976 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI SHAH, PREMAL R · 2017 to 2021
$1.9M
NIDDK NIH HHS R01 DK056645NIDDK NIH HHS R01 DK109714NIDDK NIH HHS R01 DK124369NIGMS NIH HHS K12 GM093854NIGMS NIH HHS R35 GM124976NIGMS NIH HHS R35 GM147566
6 · The paper itself

Abstract

Organisms can adapt to an environment by taking multiple mutational paths. This redundancy at the genetic level, where many mutations have similar phenotypic and fitness effects, can make untangling the molecular mechanisms of complex adaptations difficult. Here, we use the

Indexed as

Escherichia coliEscherichia coli ProteinsAdaptation, PhysiologicalBacteriaMutationRNA, MessengerEscherichia coli ProteinsRNA, MessengeradaptationE. colievolutionary biologyexperimental evolutiongeneticsgenomicsribosome profiling

Identifiers

PMID36214449
PMCPMC9645810
OpenAlexW4303986871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.