Evidence map›Paper›PMID 36212160›Full record

ArticleFrontiers in genetics2022

Systematic analysis of inheritance pattern determination in genes that cause rare neurodevelopmental diseases.

Soojin Park, Se Song Jang, Seungbok Lee, Minsoo Kim, Hyungtai Sim, Hyeongseok Jeon, Sung Eun Hong, Jean Lee, Jeongeun Lee, Eun Young Jeon and 13 more

Abstract read
In one paragraph

Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  7. Expansion of clinico-genetic spectrum ofBrain communications · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Soojin ParkDepartment of Pediatrics, Seoul National University College of Medicine, Seoul National University Children's Hospital, Seoul, South Korea.
Se Song JangDepartment of Pediatrics, Seoul National University College of Medicine, Seoul National University Children's Hospital, Seoul, South Korea.
Seungbok LeeDepartment of Pediatrics, Seoul National University College of Medicine, Seoul National University Children's Hospital, Seoul, South Korea.
Minsoo KimDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea.
Hyungtai SimDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea.
Hyeongseok JeonDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea.
Sung Eun HongDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea.
Jean LeeDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea.
Jeongeun LeeDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea.
Eun Young JeonDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea.
Jeongha LeeDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea.
Cho-Rong LeeDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea.
Soo Yeon KimDepartment of Genomic Medicine, Seoul National University Hospital, Seoul, South Korea.
Man Jin KimDepartment of Genomic Medicine, Seoul National University Hospital, Seoul, South Korea.
Jihoon G YoonDepartment of Genomic Medicine, Seoul National University Hospital, Seoul, South Korea.
Byung Chan LimDepartment of Pediatrics, Seoul National University College of Medicine, Seoul National University Children's Hospital, Seoul, South Korea.
Woo Joong KimDepartment of Pediatrics, Seoul National University College of Medicine, Seoul National University Children's Hospital, Seoul, South Korea.
Ki Joong KimDepartment of Pediatrics, Seoul National University College of Medicine, Seoul National University Children's Hospital, Seoul, South Korea.
Jung Min KoDepartment of Pediatrics, Seoul National University College of Medicine, Seoul National University Children's Hospital, Seoul, South Korea.
Anna ChoDepartment of Pediatrics, Seoul National University Bundang Hospital, Seongnam, South Korea.
Jin Sook LeeDepartment of Pediatrics, Seoul National University Hospital Child Cancer and Rare Disease Administration, Seoul National University Children's Hospital, Seoul, South Korea.
Murim ChoiDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, South Korea.
Jong-Hee ChaeDepartment of Pediatrics, Seoul National University College of Medicine, Seoul National University Children's Hospital, Seoul, South Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite recent advancements in our understanding of genetic etiology and its molecular and physiological consequences, it is not yet clear what genetic features determine the inheritance pattern of a disease. To address this issue, we conducted whole exome sequencing analysis to characterize genetic variants in 1,180 Korean patients with neurological symptoms. The diagnostic yield for definitive pathogenic variant findings was 50.8%, after including 33 cases (5.9%) additionally diagnosed by reanalysis. Of diagnosed patients, 33.4% carried inherited variants. At the genetic level, autosomal recessive-inherited genes were characterized by enrichments in metabolic process, muscle organization and metal ion homeostasis pathways. Transcriptome and interactome profiling analyses revealed less brain-centered expression and fewer protein-protein interactions for recessive genes. The majority of autosomal recessive genes were more tolerant of variation, and functional prediction scores of recessively-inherited variants tended to be lower than those of dominantly-inherited variants. Additionally, we were able to predict the rates of carriers for recessive variants. Our results showed that genes responsible for neurodevelopmental disorders harbor different molecular mechanisms and expression patterns according to their inheritance patterns. Also, calculated frequency rates for recessive variants could be utilized to pre-screen rare neurodevelopmental disorder carriers.

Indexed as

carrier predictioninheritance patternneurodevelopmental disorderrecessive disorderswhole exome sequencing

Identifiers

PMID36212160
PMCPMC9533195

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.