Evidence map›Paper›PMID 36209419›Full record

ArticleHuman molecular genetics2023

Genetic risk of osteoarthritis operates during human skeletogenesis.

Sarah J Rice, Abby Brumwell, Julia Falk, Yulia S Kehayova, John Casement, Eleanor Parker, Ines M J Hofer, Colin Shepherd, John Loughlin

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Human hip osteoarthritis-associatedbioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Review
  6. Programmed cell death in osteoarthritis.Apoptosis : an international journal on programmed cell death · 2026
    Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Sarah J RiceBiosciences Institute, International Centre for Life, Newcastle University, Newcastle upon Tyne NE1 3BZ, UK.
Abby BrumwellBiosciences Institute, International Centre for Life, Newcastle University, Newcastle upon Tyne NE1 3BZ, UK.
Julia FalkBiosciences Institute, International Centre for Life, Newcastle University, Newcastle upon Tyne NE1 3BZ, UK.
Yulia S KehayovaBiosciences Institute, International Centre for Life, Newcastle University, Newcastle upon Tyne NE1 3BZ, UK.
John CasementBioinformatics Support Unit, Faculty of Medical Sciences, Newcastle University, Framlington Place, Newcastle upon Tyne NE2 4HH, UK.
Eleanor ParkerBiosciences Institute, International Centre for Life, Newcastle University, Newcastle upon Tyne NE1 3BZ, UK.
Ines M J HoferBiosciences Institute, International Centre for Life, Newcastle University, Newcastle upon Tyne NE1 3BZ, UK.
Colin ShepherdBiosciences Institute, International Centre for Life, Newcastle University, Newcastle upon Tyne NE1 3BZ, UK.
John LoughlinBiosciences Institute, International Centre for Life, Newcastle University, Newcastle upon Tyne NE1 3BZ, UK.ORCID 0000-0003-2018-3361
Centre for Life · GBNewcastle University · GB

Funding

Medical Research Council MR/P020941/1Medical Research Council MR/R006237/1Medical Research Council MR/R502182/1Versus Arthritis 20771Versus Arthritis 22615Wellcome Trust
6 · The paper itself

Abstract

Osteoarthritis (OA) is a polygenic disease of older people resulting in the breakdown of cartilage within articular joints. Although it is a leading cause of disability, there are no disease-modifying therapies. Evidence is emerging to support the origins of OA in skeletogenesis. Whereas methylation quantitative trait loci (mQTLs) co-localizing with OA genome-wide association study signals have been identified in aged human cartilage and used to identify effector genes and variants, such analyses have never been conducted during human development. Here, for the first time, we have investigated the developmental origins of OA genetic risk at seven well-characterized OA risk loci, comprising 39 OA-mQTL CpGs, in human fetal limb (FL) and cartilage (FC) tissues using a range of molecular genetic techniques. We identified significant OA-mQTLs at 14 and 29 CpGs in FL and FC tissues, respectively, and compared our results with aged cartilage samples (AC). Differential methylation was observed at 26 sites between FC and AC, with the majority becoming actively hypermethylated in old age. Notably, 6/9 OA effector genes showed allelic expression imbalances during fetal development. Finally, we conducted ATAC-sequencing in cartilage from the developing and aged hip and knee to identify accessible chromatin regions and found enrichment for transcription factor binding motifs including SOX9 and FOS/JUN. For the first time, we have demonstrated the activity of OA-mQTLs and expression imbalance of OA effector genes during human skeletogenesis. We show striking differences in the spatiotemporal function of these loci, contributing to our understanding of OA aetiology, with implications for the timing and strategy of pharmacological interventions.

Indexed as

Cartilage, ArticularOsteoarthritisAgedDNA MethylationGenome-Wide Association StudyHumansQuantitative Trait Loci

Identifiers

PMID36209419
PMCPMC10281754
OpenAlexW4303940543

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.