Evidence map›Paper›PMID 36209177›Full record

ArticleCurrent microbiology2022

Genetic Characterization of African Swine Fever Virus in Various Outbreaks in Central and Southern Vietnam During 2019-2021.

Minh Nam Nguyen, Tram T N Ngo, Duyen M T Nguyen, Danh Cong Lai, Hai N Nguyen, Trang T P Nguyen, Joo Young Lee, Toan T Nguyen, Duy T Do

Abstract read
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Article in Current microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Minh Nam Nguyen *Department of Biomedical Engineering, School of Medicine, Vietnam National University Ho Chi Minh City (VNU-HCM), Ho Chi Minh City, 700000, Vietnam.ORCID http://orcid.org/0000-0001-5596-6222
Tram T N Ngo *Department of Infectious Diseases and Veterinary Public Health, Faculty of Animal Science and Veterinary Medicine, Nong Lam University HCMC, Linh Trung Ward, Thu Duc, Ho Chi Minh City, Vietnam.
Duyen M T NguyenDepartment of Infectious Diseases and Veterinary Public Health, Faculty of Animal Science and Veterinary Medicine, Nong Lam University HCMC, Linh Trung Ward, Thu Duc, Ho Chi Minh City, Vietnam.
Danh Cong LaiDepartment of Infectious Diseases and Veterinary Public Health, Faculty of Animal Science and Veterinary Medicine, Nong Lam University HCMC, Linh Trung Ward, Thu Duc, Ho Chi Minh City, Vietnam.
Hai N NguyenDepartment of Infectious Diseases and Veterinary Public Health, Faculty of Animal Science and Veterinary Medicine, Nong Lam University HCMC, Linh Trung Ward, Thu Duc, Ho Chi Minh City, Vietnam.
Trang T P NguyenDepartment of Infectious Diseases and Veterinary Public Health, Faculty of Animal Science and Veterinary Medicine, Nong Lam University HCMC, Linh Trung Ward, Thu Duc, Ho Chi Minh City, Vietnam.
Joo Young LeeChoongAng Vaccine Laboratories, Daejeon, 34055, Republic of Korea.
Toan T NguyenDepartment of Infectious Diseases and Veterinary Public Health, Faculty of Animal Science and Veterinary Medicine, Nong Lam University HCMC, Linh Trung Ward, Thu Duc, Ho Chi Minh City, Vietnam. toan.nguyentat@hcmuaf.edu.vn.
Duy T DoDepartment of Infectious Diseases and Veterinary Public Health, Faculty of Animal Science and Veterinary Medicine, Nong Lam University HCMC, Linh Trung Ward, Thu Duc, Ho Chi Minh City, Vietnam. duy.dotien@hcmuaf.edu.vn.ORCID http://orcid.org/0000-0002-1825-2623
Nong Lam University Ho Chi Minh City · VNHo Chi Minh City University of Technology and Engineering · VNVietnam National University Ho Chi Minh City · VN

Funding

Korea Institute of Planning and Evaluation for Technology in Food, Agriculture and Forestry 11908105
6 · The paper itself

Abstract

This study aimed to identify potential genetic diversity among African swine fever virus (ASFV) strains circulating in central and southern Vietnam. Thirty ASFV strains were collected from domestic pigs and convalescent pigs with ASFV-infected clinical signs from 19 different provinces of central and southern Vietnam during 2019-2021. A portion of the B646L (p72) gene and the entire E183L (p54), CP204L (p30), and B602L (CVR) genes were amplified, purified, and sequenced. Web-based BLAST and MEGA X software were used for sequence analysis. Analysis of the partial B646L (p72) gene, the full-length E183L (p54) and CP204L (p30) genes, and the central hypervariable region (CVR) of the B602L gene sequence showed that all 30 ASFV isolates belonged to genotype II and were 100% identical to the previously identified strains in Vietnam and China. Analysis of the p72, p54, and p30 regions did not indicate any change in the nucleotide and amino acid sequences among these strains in 3 years of research. No novel variant was found in the CVR within the B602L gene. Analysis of the CVR showed that these ASFV strains belong to subgroup XXXII. The results of this study revealed that these ASFVs shared high similarity with ASFV isolates detected previously in northern Vietnam and China. Taken together, the results of this study and a previous study in Vietnam showed high stability and no genetic diversity in the ASFV genome.

Indexed as

African Swine FeverAfrican Swine Fever VirusAnimalsDisease OutbreaksGenotypeNucleotidesPhylogenySus scrofaSwineVietnamNucleotides

Identifiers

PMID36209177
OpenAlexW4303674009

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.